miRNA display CGI


Results 1 - 20 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28829 5' -53.8 NC_006146.1 + 166240 0.68 0.931927
Target:  5'- cUCGcCCACccGGCCCAGGaCGGCGGGg -3'
miRNA:   3'- -AGUcGGUGcuCUGGGUCCaGUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 162396 0.66 0.971525
Target:  5'- --cGCC-CGGGACCCcGGUgGGCcAGg -3'
miRNA:   3'- aguCGGuGCUCUGGGuCCAgUUGuUC- -5'
28829 5' -53.8 NC_006146.1 + 161265 0.7 0.828502
Target:  5'- cUguGCCGCaugcgccuggggGAGACCgAGGUCAcgaaGCAGGa -3'
miRNA:   3'- -AguCGGUG------------CUCUGGgUCCAGU----UGUUC- -5'
28829 5' -53.8 NC_006146.1 + 159281 0.68 0.931927
Target:  5'- -gGGCCuCGGGGCCCucgcaGUCGGCAAa -3'
miRNA:   3'- agUCGGuGCUCUGGGuc---CAGUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 158880 0.67 0.935464
Target:  5'- --cGCCACGuagcugccggucucGGGCaCCGGaGUCAGCGAGc -3'
miRNA:   3'- aguCGGUGC--------------UCUG-GGUC-CAGUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 158728 0.67 0.940311
Target:  5'- -gAGCC-CGAGGCCCccgagaucacguagGGGUCucuccgcuGCGAGg -3'
miRNA:   3'- agUCGGuGCUCUGGG--------------UCCAGu-------UGUUC- -5'
28829 5' -53.8 NC_006146.1 + 158560 0.72 0.755443
Target:  5'- -gGGCC-UGAGGCCCAGGg--GCGAGg -3'
miRNA:   3'- agUCGGuGCUCUGGGUCCaguUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 158130 0.66 0.962036
Target:  5'- -gGGCCGCG---UCCAGGUcCGGCAGGu -3'
miRNA:   3'- agUCGGUGCucuGGGUCCA-GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 157888 0.67 0.950547
Target:  5'- cUCuGCCAgcaGAGACCCGGG-CGAUc-- -3'
miRNA:   3'- -AGuCGGUg--CUCUGGGUCCaGUUGuuc -5'
28829 5' -53.8 NC_006146.1 + 157847 0.68 0.926667
Target:  5'- gCGGCCGCcuuGGGGCCCGGaGUCucgGAGg -3'
miRNA:   3'- aGUCGGUG---CUCUGGGUC-CAGuugUUC- -5'
28829 5' -53.8 NC_006146.1 + 157481 0.66 0.971525
Target:  5'- -uGGCCugG-GACCCGGGgaGGCAc- -3'
miRNA:   3'- agUCGGugCuCUGGGUCCagUUGUuc -5'
28829 5' -53.8 NC_006146.1 + 157192 0.66 0.971525
Target:  5'- cCGGCCugGuGGACCCgagAGGcCGaaaGCGGGg -3'
miRNA:   3'- aGUCGGugC-UCUGGG---UCCaGU---UGUUC- -5'
28829 5' -53.8 NC_006146.1 + 156910 0.68 0.915415
Target:  5'- cCAGCCcggcCGAGGCCUGGGUggCGGCGc- -3'
miRNA:   3'- aGUCGGu---GCUCUGGGUCCA--GUUGUuc -5'
28829 5' -53.8 NC_006146.1 + 155481 0.72 0.755443
Target:  5'- -gGGCC-UGAGGCCCAGGg--GCGAGg -3'
miRNA:   3'- agUCGGuGCUCUGGGUCCaguUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 154810 0.67 0.950547
Target:  5'- cUCuGCCAgcaGAGACCCGGG-CGAUc-- -3'
miRNA:   3'- -AGuCGGUg--CUCUGGGUCCaGUUGuuc -5'
28829 5' -53.8 NC_006146.1 + 154769 0.68 0.926667
Target:  5'- gCGGCCGCcuuGGGGCCCGGaGUCucgGAGg -3'
miRNA:   3'- aGUCGGUG---CUCUGGGUC-CAGuugUUC- -5'
28829 5' -53.8 NC_006146.1 + 154403 0.66 0.971525
Target:  5'- -uGGCCugG-GACCCGGGgaGGCAc- -3'
miRNA:   3'- agUCGGugCuCUGGGUCCagUUGUuc -5'
28829 5' -53.8 NC_006146.1 + 154253 0.66 0.958435
Target:  5'- -aGGCCGCugguGGGCCuCAGGUUGACGGu -3'
miRNA:   3'- agUCGGUGc---UCUGG-GUCCAGUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 154114 0.66 0.971525
Target:  5'- cCGGCCugGuGGACCCgagAGGcCGaaaGCGGGg -3'
miRNA:   3'- aGUCGGugC-UCUGGG---UCCaGU---UGUUC- -5'
28829 5' -53.8 NC_006146.1 + 152530 0.66 0.965414
Target:  5'- cCGGCCACcaGGACCaGGGUgAGCAu- -3'
miRNA:   3'- aGUCGGUGc-UCUGGgUCCAgUUGUuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.