miRNA display CGI


Results 21 - 40 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28829 5' -53.8 NC_006146.1 + 26204 0.71 0.783926
Target:  5'- gCGGCCugG-GAaccaagaCCAGGUCGugGAGa -3'
miRNA:   3'- aGUCGGugCuCUg------GGUCCAGUugUUC- -5'
28829 5' -53.8 NC_006146.1 + 55161 0.71 0.793155
Target:  5'- gUCAGCCGCcggGAGGCCaGGGUgGACGc- -3'
miRNA:   3'- -AGUCGGUG---CUCUGGgUCCAgUUGUuc -5'
28829 5' -53.8 NC_006146.1 + 104742 0.71 0.793155
Target:  5'- cUCGGUCAUGAGcACCCuGG-CAACAGc -3'
miRNA:   3'- -AGUCGGUGCUC-UGGGuCCaGUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 117490 0.71 0.796806
Target:  5'- cUCGGCCGaGAGACUCGcGGUCAuucuccuggcuaacgGCAGGa -3'
miRNA:   3'- -AGUCGGUgCUCUGGGU-CCAGU---------------UGUUC- -5'
28829 5' -53.8 NC_006146.1 + 147720 0.71 0.802236
Target:  5'- -aGGCgGCGGGGCCUGGGUaaUAGCGGGc -3'
miRNA:   3'- agUCGgUGCUCUGGGUCCA--GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 114704 0.71 0.811159
Target:  5'- cUCGuCCGCGAGACCCGGGcccuggCGGcCGAGu -3'
miRNA:   3'- -AGUcGGUGCUCUGGGUCCa-----GUU-GUUC- -5'
28829 5' -53.8 NC_006146.1 + 46038 0.71 0.819918
Target:  5'- -aGGCgACGGGGCCCuccaGGGgacgCAGCGAGu -3'
miRNA:   3'- agUCGgUGCUCUGGG----UCCa---GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 123511 0.71 0.819918
Target:  5'- -uGGCCACGGucGACCCcaggcGGGUCGcgggugGCAAGg -3'
miRNA:   3'- agUCGGUGCU--CUGGG-----UCCAGU------UGUUC- -5'
28829 5' -53.8 NC_006146.1 + 136848 0.71 0.819918
Target:  5'- --uGCCACGGGACCCccGGcCGGCAu- -3'
miRNA:   3'- aguCGGUGCUCUGGGu-CCaGUUGUuc -5'
28829 5' -53.8 NC_006146.1 + 99374 0.7 0.828502
Target:  5'- -gGGCCGCgcguuGAGGCCCAGG--AGCGAGu -3'
miRNA:   3'- agUCGGUG-----CUCUGGGUCCagUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 161265 0.7 0.828502
Target:  5'- cUguGCCGCaugcgccuggggGAGACCgAGGUCAcgaaGCAGGa -3'
miRNA:   3'- -AguCGGUG------------CUCUGGgUCCAGU----UGUUC- -5'
28829 5' -53.8 NC_006146.1 + 54733 0.7 0.836904
Target:  5'- gCGGCCGagggGAGACUCAGGUCGcuGCcgAAGg -3'
miRNA:   3'- aGUCGGUg---CUCUGGGUCCAGU--UG--UUC- -5'
28829 5' -53.8 NC_006146.1 + 52264 0.7 0.845116
Target:  5'- aCGGCCG-GAGACCCAGcaagCAGCGGa -3'
miRNA:   3'- aGUCGGUgCUCUGGGUCca--GUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 126009 0.7 0.848346
Target:  5'- cCGGCCgcucaagguaccaucGCGAG-CCCAGGggcuucUCAGCGGGg -3'
miRNA:   3'- aGUCGG---------------UGCUCuGGGUCC------AGUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 82370 0.7 0.860942
Target:  5'- gCAGCCaucGCGGGcuccacACCCGGGUU-ACAGGg -3'
miRNA:   3'- aGUCGG---UGCUC------UGGGUCCAGuUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 69866 0.69 0.868542
Target:  5'- gUCGGgCguaGAGGCCCAGGUCcACGGc -3'
miRNA:   3'- -AGUCgGug-CUCUGGGUCCAGuUGUUc -5'
28829 5' -53.8 NC_006146.1 + 121917 0.69 0.875926
Target:  5'- cCAGCCu-----CCCAGGUCAGCAAc -3'
miRNA:   3'- aGUCGGugcucuGGGUCCAGUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 51215 0.69 0.875926
Target:  5'- gCAuCCACGAGGCCgGGGU-GGCGGGu -3'
miRNA:   3'- aGUcGGUGCUCUGGgUCCAgUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 5670 0.69 0.875926
Target:  5'- cCAGCCGCGGGugCUucuGaUUAGCGAGg -3'
miRNA:   3'- aGUCGGUGCUCugGGu--CcAGUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 66208 0.69 0.883088
Target:  5'- -aGGCgACGAGAUCCAGGccCAGCu-- -3'
miRNA:   3'- agUCGgUGCUCUGGGUCCa-GUUGuuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.