miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28829 5' -53.8 NC_006146.1 + 25057 0.66 0.965414
Target:  5'- cCAGCC-CaGAGGCCCgAGGUuggagcCGGCGGGc -3'
miRNA:   3'- aGUCGGuG-CUCUGGG-UCCA------GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 28135 0.66 0.965414
Target:  5'- cCAGCC-CaGAGGCCCgAGGUuggagcCGGCGGGc -3'
miRNA:   3'- aGUCGGuG-CUCUGGG-UCCA------GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 12745 0.66 0.965414
Target:  5'- cCAGCC-CaGAGGCCCgAGGUuggagcCGGCGGGc -3'
miRNA:   3'- aGUCGGuG-CUCUGGG-UCCA------GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 15824 0.66 0.965414
Target:  5'- cCAGCC-CaGAGGCCCgAGGUuggagcCGGCGGGc -3'
miRNA:   3'- aGUCGGuG-CUCUGGG-UCCA------GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 21979 0.66 0.965414
Target:  5'- cCAGCC-CaGAGGCCCgAGGUuggagcCGGCGGGc -3'
miRNA:   3'- aGUCGGuG-CUCUGGG-UCCA------GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 18902 0.66 0.965414
Target:  5'- cCAGCC-CaGAGGCCCgAGGUuggagcCGGCGGGc -3'
miRNA:   3'- aGUCGGuG-CUCUGGG-UCCA------GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 152530 0.66 0.965414
Target:  5'- cCGGCCACcaGGACCaGGGUgAGCAu- -3'
miRNA:   3'- aGUCGGUGc-UCUGGgUCCAgUUGUuc -5'
28829 5' -53.8 NC_006146.1 + 116186 0.66 0.965414
Target:  5'- cUCGGCCGCccuGACCCGGGcCcGCc-- -3'
miRNA:   3'- -AGUCGGUGcu-CUGGGUCCaGuUGuuc -5'
28829 5' -53.8 NC_006146.1 + 11017 0.66 0.965414
Target:  5'- cCGGCCuCGAGGCCCucugCGAgGAGa -3'
miRNA:   3'- aGUCGGuGCUCUGGGuccaGUUgUUC- -5'
28829 5' -53.8 NC_006146.1 + 102998 0.66 0.965414
Target:  5'- uUCGGCuccCACGAGGCCCAGuUCGu---- -3'
miRNA:   3'- -AGUCG---GUGCUCUGGGUCcAGUuguuc -5'
28829 5' -53.8 NC_006146.1 + 30983 0.66 0.962036
Target:  5'- aUguGCCAUG-GACCCAGGaUCGcccauGCAu- -3'
miRNA:   3'- -AguCGGUGCuCUGGGUCC-AGU-----UGUuc -5'
28829 5' -53.8 NC_006146.1 + 42731 0.66 0.962036
Target:  5'- gCAGCCGCG-GAUCCGGG-CggUg-- -3'
miRNA:   3'- aGUCGGUGCuCUGGGUCCaGuuGuuc -5'
28829 5' -53.8 NC_006146.1 + 158130 0.66 0.962036
Target:  5'- -gGGCCGCG---UCCAGGUcCGGCAGGu -3'
miRNA:   3'- agUCGGUGCucuGGGUCCA-GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 17634 0.66 0.958435
Target:  5'- gCGGCC-CuGGACCCAGGa-AACGGGu -3'
miRNA:   3'- aGUCGGuGcUCUGGGUCCagUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 20712 0.66 0.958435
Target:  5'- gCGGCC-CuGGACCCAGGa-AACGGGu -3'
miRNA:   3'- aGUCGGuGcUCUGGGUCCagUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 154253 0.66 0.958435
Target:  5'- -aGGCCGCugguGGGCCuCAGGUUGACGGu -3'
miRNA:   3'- agUCGGUGc---UCUGG-GUCCAGUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 43504 0.66 0.958435
Target:  5'- cCGGCgGCGGGGCCCAGccccaaGACAc- -3'
miRNA:   3'- aGUCGgUGCUCUGGGUCcag---UUGUuc -5'
28829 5' -53.8 NC_006146.1 + 99030 0.66 0.958435
Target:  5'- aCGGCCGuguaGAGGCCCcccAGGgccCGGCGGGu -3'
miRNA:   3'- aGUCGGUg---CUCUGGG---UCCa--GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 123594 0.66 0.958435
Target:  5'- aUCAuCCAgGAGGCCCGGGagGagucccggcuGCAGGa -3'
miRNA:   3'- -AGUcGGUgCUCUGGGUCCagU----------UGUUC- -5'
28829 5' -53.8 NC_006146.1 + 40309 0.66 0.958435
Target:  5'- aUAGCgGuCGGGGCCUcggugGGGuUCAACGAGa -3'
miRNA:   3'- aGUCGgU-GCUCUGGG-----UCC-AGUUGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.