miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28829 5' -53.8 NC_006146.1 + 26868 0.66 0.958435
Target:  5'- gCGGCC-CuGGACCCAGGa-AACGGGu -3'
miRNA:   3'- aGUCGGuGcUCUGGGUCCagUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 154253 0.66 0.958435
Target:  5'- -aGGCCGCugguGGGCCuCAGGUUGACGGu -3'
miRNA:   3'- agUCGGUGc---UCUGG-GUCCAGUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 99030 0.66 0.958435
Target:  5'- aCGGCCGuguaGAGGCCCcccAGGgccCGGCGGGu -3'
miRNA:   3'- aGUCGGUg---CUCUGGG---UCCa--GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 83898 0.67 0.954607
Target:  5'- cUAGCCAUGAGGCCUaaaaAGGaCGGCc-- -3'
miRNA:   3'- aGUCGGUGCUCUGGG----UCCaGUUGuuc -5'
28829 5' -53.8 NC_006146.1 + 8634 0.67 0.954607
Target:  5'- --cGCCccaGCGAGcCCCAGGaaAACAGGc -3'
miRNA:   3'- aguCGG---UGCUCuGGGUCCagUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 101589 0.67 0.950547
Target:  5'- -gAGCCaacgACGAGGCCCAG---AACGAGg -3'
miRNA:   3'- agUCGG----UGCUCUGGGUCcagUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 47525 0.67 0.950547
Target:  5'- cCAGCCagguuGCGGGGCCCccGGcCAGCGc- -3'
miRNA:   3'- aGUCGG-----UGCUCUGGGu-CCaGUUGUuc -5'
28829 5' -53.8 NC_006146.1 + 157888 0.67 0.950547
Target:  5'- cUCuGCCAgcaGAGACCCGGG-CGAUc-- -3'
miRNA:   3'- -AGuCGGUg--CUCUGGGUCCaGUUGuuc -5'
28829 5' -53.8 NC_006146.1 + 151732 0.67 0.950547
Target:  5'- cUCuGCCAgcaGAGACCCGGG-CGAUc-- -3'
miRNA:   3'- -AGuCGGUg--CUCUGGGUCCaGUUGuuc -5'
28829 5' -53.8 NC_006146.1 + 148655 0.67 0.950547
Target:  5'- cUCuGCCAgcaGAGACCCGGG-CGAUc-- -3'
miRNA:   3'- -AGuCGGUg--CUCUGGGUCCaGUUGuuc -5'
28829 5' -53.8 NC_006146.1 + 154810 0.67 0.950547
Target:  5'- cUCuGCCAgcaGAGACCCGGG-CGAUc-- -3'
miRNA:   3'- -AGuCGGUg--CUCUGGGUCCaGUUGuuc -5'
28829 5' -53.8 NC_006146.1 + 145577 0.67 0.950547
Target:  5'- cUCuGCCAgcaGAGACCCGGG-CGAUc-- -3'
miRNA:   3'- -AGuCGGUg--CUCUGGGUCCaGUUGuuc -5'
28829 5' -53.8 NC_006146.1 + 142499 0.67 0.950547
Target:  5'- cUCuGCCAgcaGAGACCCGGG-CGAUc-- -3'
miRNA:   3'- -AGuCGGUg--CUCUGGGUCCaGUUGuuc -5'
28829 5' -53.8 NC_006146.1 + 45727 0.67 0.946252
Target:  5'- -gGGCCACGAcccugaccuGGCCCAGaGUCuuCAc- -3'
miRNA:   3'- agUCGGUGCU---------CUGGGUC-CAGuuGUuc -5'
28829 5' -53.8 NC_006146.1 + 49424 0.67 0.946252
Target:  5'- gCGGCCcccACGAugGACCCGGcGUUGGCGAu -3'
miRNA:   3'- aGUCGG---UGCU--CUGGGUC-CAGUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 95107 0.67 0.946252
Target:  5'- -gGGCCugauCGAGACCCuGGaaAGCAGa -3'
miRNA:   3'- agUCGGu---GCUCUGGGuCCagUUGUUc -5'
28829 5' -53.8 NC_006146.1 + 33033 0.67 0.946252
Target:  5'- cCGGCCcgggGCGGGGCCCGGGaCAc---- -3'
miRNA:   3'- aGUCGG----UGCUCUGGGUCCaGUuguuc -5'
28829 5' -53.8 NC_006146.1 + 52372 0.67 0.941719
Target:  5'- aCAGCaucccCGAGACCCcGGUCGAg--- -3'
miRNA:   3'- aGUCGgu---GCUCUGGGuCCAGUUguuc -5'
28829 5' -53.8 NC_006146.1 + 43329 0.67 0.941719
Target:  5'- gCGGCCuCGGccGCCCAGGgcCAGCAGGc -3'
miRNA:   3'- aGUCGGuGCUc-UGGGUCCa-GUUGUUC- -5'
28829 5' -53.8 NC_006146.1 + 128069 0.67 0.941719
Target:  5'- gCGGCCcuCGAGGCCCugauccuGGUCuACAc- -3'
miRNA:   3'- aGUCGGu-GCUCUGGGu------CCAGuUGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.