miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28832 3' -58.9 NC_006146.1 + 3097 0.67 0.773206
Target:  5'- gGCGGGCcacgcGCgCCCGCCacgcccagcuGUCAUUCUcCCc -3'
miRNA:   3'- gCGUCCG-----UG-GGGCGG----------CGGUAAGAaGG- -5'
28832 3' -58.9 NC_006146.1 + 161956 0.67 0.764056
Target:  5'- aGCAGGCuaaacuuCCCCaGCC-CCAUUUagacaagaaaUUCCu -3'
miRNA:   3'- gCGUCCGu------GGGG-CGGcGGUAAG----------AAGG- -5'
28832 3' -58.9 NC_006146.1 + 70883 0.67 0.782237
Target:  5'- cCGCGG--ACCCCGCCGCC-----UCCc -3'
miRNA:   3'- -GCGUCcgUGGGGCGGCGGuaagaAGG- -5'
28832 3' -58.9 NC_006146.1 + 127915 0.67 0.764057
Target:  5'- uGCGGGCGCCgggCUGCUGCCcacaaacUCCg -3'
miRNA:   3'- gCGUCCGUGG---GGCGGCGGuaaga--AGG- -5'
28832 3' -58.9 NC_006146.1 + 153202 0.67 0.773206
Target:  5'- -cCAGGCGCUUgGCCGCCAcggg-CCg -3'
miRNA:   3'- gcGUCCGUGGGgCGGCGGUaagaaGG- -5'
28832 3' -58.9 NC_006146.1 + 55529 0.67 0.745434
Target:  5'- gGCcaGGGCcuccaGCUCCGCCGCCAcgCcggCCa -3'
miRNA:   3'- gCG--UCCG-----UGGGGCGGCGGUaaGaa-GG- -5'
28832 3' -58.9 NC_006146.1 + 126200 0.67 0.790257
Target:  5'- aGCGGGgGCCacggccaCCGCCGCCAcaccggcaucaUCgUCCg -3'
miRNA:   3'- gCGUCCgUGG-------GGCGGCGGUa----------AGaAGG- -5'
28832 3' -58.9 NC_006146.1 + 21249 0.67 0.782237
Target:  5'- uGCAGGCGCgCUGCCgGCgCGUgcUCgaCCu -3'
miRNA:   3'- gCGUCCGUGgGGCGG-CG-GUA--AGaaGG- -5'
28832 3' -58.9 NC_006146.1 + 115864 0.67 0.775928
Target:  5'- gGCAGGCcccgGCCCCGacccccaucccgcCCGCCcccaucccgcccgggGggCUUCCg -3'
miRNA:   3'- gCGUCCG----UGGGGC-------------GGCGG---------------UaaGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 128600 0.67 0.773206
Target:  5'- uCGCAgGGCACUCCGgcucCCGCUccUCcUCCc -3'
miRNA:   3'- -GCGU-CCGUGGGGC----GGCGGuaAGaAGG- -5'
28832 3' -58.9 NC_006146.1 + 44440 0.67 0.745433
Target:  5'- uGCGcGCGCuuaCCUGCCGCCuUUCUcgCCg -3'
miRNA:   3'- gCGUcCGUG---GGGCGGCGGuAAGAa-GG- -5'
28832 3' -58.9 NC_006146.1 + 42714 0.67 0.791141
Target:  5'- cCGC-GGCGCCCCccuggGCCGCC-----UCCc -3'
miRNA:   3'- -GCGuCCGUGGGG-----CGGCGGuaagaAGG- -5'
28832 3' -58.9 NC_006146.1 + 1233 0.67 0.773206
Target:  5'- gGCGGGCcacgcGCgCCCGCCacgcccagcuGUCAUUCUcCCc -3'
miRNA:   3'- gCGUCCG-----UG-GGGCGG----------CGGUAAGAaGG- -5'
28832 3' -58.9 NC_006146.1 + 120012 0.67 0.782237
Target:  5'- -cCAGGcCGCaCCCGCgGCCAg---UCCg -3'
miRNA:   3'- gcGUCC-GUG-GGGCGgCGGUaagaAGG- -5'
28832 3' -58.9 NC_006146.1 + 2165 0.67 0.773206
Target:  5'- gGCGGGCcacgcGCgCCCGCCacgcccagcuGUCAUUCUcCCc -3'
miRNA:   3'- gCGUCCG-----UG-GGGCGG----------CGGUAAGAaGG- -5'
28832 3' -58.9 NC_006146.1 + 89122 0.67 0.791141
Target:  5'- aGguGGCACCCCcggagaccggGCgGCCAUgCUcUCa -3'
miRNA:   3'- gCguCCGUGGGG----------CGgCGGUAaGAaGG- -5'
28832 3' -58.9 NC_006146.1 + 48105 0.67 0.791141
Target:  5'- aGCGcGGC-CUCgGCCGCCcgUCUcuUCUc -3'
miRNA:   3'- gCGU-CCGuGGGgCGGCGGuaAGA--AGG- -5'
28832 3' -58.9 NC_006146.1 + 55836 0.67 0.791141
Target:  5'- gGUGGGCACCCgGCCaCCAgcaacaCCg -3'
miRNA:   3'- gCGUCCGUGGGgCGGcGGUaagaa-GG- -5'
28832 3' -58.9 NC_006146.1 + 100149 0.67 0.773206
Target:  5'- gGCGGGUAUUCaCGCCGuCCAcggCUuUCCg -3'
miRNA:   3'- gCGUCCGUGGG-GCGGC-GGUaa-GA-AGG- -5'
28832 3' -58.9 NC_006146.1 + 124448 0.67 0.764056
Target:  5'- gGCAcGCAUCCggccuaCGCCGCCGc-CUUCCu -3'
miRNA:   3'- gCGUcCGUGGG------GCGGCGGUaaGAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.