miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28832 3' -58.9 NC_006146.1 + 150888 0.7 0.618233
Target:  5'- aCGCuGGCACaCCgGgCCGCCGgggUCccUCCg -3'
miRNA:   3'- -GCGuCCGUG-GGgC-GGCGGUa--AGa-AGG- -5'
28832 3' -58.9 NC_006146.1 + 147810 0.7 0.618233
Target:  5'- aCGCuGGCACaCCgGgCCGCCGgggUCccUCCg -3'
miRNA:   3'- -GCGuCCGUG-GGgC-GGCGGUa--AGa-AGG- -5'
28832 3' -58.9 NC_006146.1 + 144732 0.7 0.618233
Target:  5'- aCGCuGGCACaCCgGgCCGCCGgggUCccUCCg -3'
miRNA:   3'- -GCGuCCGUG-GGgC-GGCGGUa--AGa-AGG- -5'
28832 3' -58.9 NC_006146.1 + 141655 0.7 0.618233
Target:  5'- aCGCuGGCACaCCgGgCCGCCGgggUCccUCCg -3'
miRNA:   3'- -GCGuCCGUG-GGgC-GGCGGUa--AGa-AGG- -5'
28832 3' -58.9 NC_006146.1 + 157044 0.7 0.618233
Target:  5'- aCGCuGGCACaCCgGgCCGCCGgggUCccUCCg -3'
miRNA:   3'- -GCGuCCGUG-GGgC-GGCGGUa--AGa-AGG- -5'
28832 3' -58.9 NC_006146.1 + 153966 0.7 0.618233
Target:  5'- aCGCuGGCACaCCgGgCCGCCGgggUCccUCCg -3'
miRNA:   3'- -GCGuCCGUG-GGgC-GGCGGUa--AGa-AGG- -5'
28832 3' -58.9 NC_006146.1 + 61508 0.69 0.62817
Target:  5'- aGgAGGC-CCCUGCCGCCcugUCaUUCa -3'
miRNA:   3'- gCgUCCGuGGGGCGGCGGua-AGaAGG- -5'
28832 3' -58.9 NC_006146.1 + 1744 0.69 0.62817
Target:  5'- uGCAGGCGCcggccccuCCCGCCgGCCA----UCCc -3'
miRNA:   3'- gCGUCCGUG--------GGGCGG-CGGUaagaAGG- -5'
28832 3' -58.9 NC_006146.1 + 2676 0.69 0.62817
Target:  5'- uGCAGGCGCcggccccuCCCGCCgGCCA----UCCc -3'
miRNA:   3'- gCGUCCGUG--------GGGCGG-CGGUaagaAGG- -5'
28832 3' -58.9 NC_006146.1 + 3608 0.69 0.62817
Target:  5'- uGCAGGCGCcggccccuCCCGCCgGCCA----UCCc -3'
miRNA:   3'- gCGUCCGUG--------GGGCGG-CGGUaagaAGG- -5'
28832 3' -58.9 NC_006146.1 + 4641 0.69 0.63811
Target:  5'- uGCGGGCccagaacauauACCCCGCCGUCcuggg-CCg -3'
miRNA:   3'- gCGUCCG-----------UGGGGCGGCGGuaagaaGG- -5'
28832 3' -58.9 NC_006146.1 + 79801 0.69 0.63811
Target:  5'- aGCGGGCGUCgaGuuGCCAUggCUUCCu -3'
miRNA:   3'- gCGUCCGUGGggCggCGGUAa-GAAGG- -5'
28832 3' -58.9 NC_006146.1 + 48400 0.69 0.647052
Target:  5'- cCGC-GGCcuccauucucucgACCCCGCCGCCGUcc--CCg -3'
miRNA:   3'- -GCGuCCG-------------UGGGGCGGCGGUAagaaGG- -5'
28832 3' -58.9 NC_006146.1 + 31748 0.69 0.664903
Target:  5'- -aCAGGCGCCCCcccgggggacgggaGCCcCCGUUCggCCc -3'
miRNA:   3'- gcGUCCGUGGGG--------------CGGcGGUAAGaaGG- -5'
28832 3' -58.9 NC_006146.1 + 165915 0.69 0.667871
Target:  5'- -aCAGGCACCCCgcguuagugaagGCCGCCAggaggCUcUCg -3'
miRNA:   3'- gcGUCCGUGGGG------------CGGCGGUaa---GAaGG- -5'
28832 3' -58.9 NC_006146.1 + 113509 0.69 0.667871
Target:  5'- --aGGGgGCCaUgGCCGCCAUUCUaCCa -3'
miRNA:   3'- gcgUCCgUGG-GgCGGCGGUAAGAaGG- -5'
28832 3' -58.9 NC_006146.1 + 23174 0.69 0.674788
Target:  5'- uCGC-GGCccgcuauuacccagGCCCCGCCGCC----UUCCu -3'
miRNA:   3'- -GCGuCCG--------------UGGGGCGGCGGuaagAAGG- -5'
28832 3' -58.9 NC_006146.1 + 61686 0.69 0.677747
Target:  5'- gGgGGGCACggguuggggaCCGCCGCCAg---UCCa -3'
miRNA:   3'- gCgUCCGUGg---------GGCGGCGGUaagaAGG- -5'
28832 3' -58.9 NC_006146.1 + 63122 0.69 0.677748
Target:  5'- gCGCAGGUGCCCCugggaccuGCUGgCCAU-CU-CCg -3'
miRNA:   3'- -GCGUCCGUGGGG--------CGGC-GGUAaGAaGG- -5'
28832 3' -58.9 NC_006146.1 + 3831 0.69 0.677748
Target:  5'- gGCgGGGCAcCCCCGCUGCC---CUaCCg -3'
miRNA:   3'- gCG-UCCGU-GGGGCGGCGGuaaGAaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.