miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28832 3' -58.9 NC_006146.1 + 127841 0.73 0.438028
Target:  5'- uCGCuGGCACCCCucaaCCGCCAggCggcguaUCCg -3'
miRNA:   3'- -GCGuCCGUGGGGc---GGCGGUaaGa-----AGG- -5'
28832 3' -58.9 NC_006146.1 + 33413 0.73 0.455726
Target:  5'- cCGCcuGGGCACCgcugCGCCGCCGcUCggUCCu -3'
miRNA:   3'- -GCG--UCCGUGGg---GCGGCGGUaAGa-AGG- -5'
28832 3' -58.9 NC_006146.1 + 34205 0.72 0.482975
Target:  5'- gGCAGGgACCUcgCGCCGCCcg-CUUCa -3'
miRNA:   3'- gCGUCCgUGGG--GCGGCGGuaaGAAGg -5'
28832 3' -58.9 NC_006146.1 + 138035 0.72 0.482975
Target:  5'- gGCAGGgACCUcgCGCCGCCcg-CUUCa -3'
miRNA:   3'- gCGUCCgUGGG--GCGGCGGuaaGAAGg -5'
28832 3' -58.9 NC_006146.1 + 33169 0.72 0.482975
Target:  5'- gGCuGGGCACCgCCgcGCCGCCGcUCggUCCu -3'
miRNA:   3'- gCG-UCCGUGG-GG--CGGCGGUaAGa-AGG- -5'
28832 3' -58.9 NC_006146.1 + 123960 0.72 0.490373
Target:  5'- aCGCGGGCACCCUGUgGCUGgagaccgagUCCc -3'
miRNA:   3'- -GCGUCCGUGGGGCGgCGGUaaga-----AGG- -5'
28832 3' -58.9 NC_006146.1 + 31542 0.72 0.495025
Target:  5'- aGCAGGCACCCCccccggcGCCGCCc--CUaacaucaccagaacaUCCc -3'
miRNA:   3'- gCGUCCGUGGGG-------CGGCGGuaaGA---------------AGG- -5'
28832 3' -58.9 NC_006146.1 + 21303 0.71 0.510984
Target:  5'- aGgAGGCGgccagccuccucUCCCGCCGCCc--CUUCCa -3'
miRNA:   3'- gCgUCCGU------------GGGGCGGCGGuaaGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 33293 0.71 0.510984
Target:  5'- gGCuGGGCACCgcugCGCCGCCGcUCggUCCu -3'
miRNA:   3'- gCG-UCCGUGGg---GCGGCGGUaAGa-AGG- -5'
28832 3' -58.9 NC_006146.1 + 127403 0.71 0.520472
Target:  5'- --gGGGCuggGCCCCGCCGCCGgag--CCg -3'
miRNA:   3'- gcgUCCG---UGGGGCGGCGGUaagaaGG- -5'
28832 3' -58.9 NC_006146.1 + 31452 0.71 0.520472
Target:  5'- uGCAGGCACCCCcCCGggcaCCGUgggggcCUUCUc -3'
miRNA:   3'- gCGUCCGUGGGGcGGC----GGUAa-----GAAGG- -5'
28832 3' -58.9 NC_006146.1 + 52985 0.71 0.530027
Target:  5'- gCGCAGGCGgaCCUGCCGgCCGUgg--CCg -3'
miRNA:   3'- -GCGUCCGUg-GGGCGGC-GGUAagaaGG- -5'
28832 3' -58.9 NC_006146.1 + 114089 0.71 0.539646
Target:  5'- uCGgGGGCcagaaGCCCCGcCCGCCAgaCggCCg -3'
miRNA:   3'- -GCgUCCG-----UGGGGC-GGCGGUaaGaaGG- -5'
28832 3' -58.9 NC_006146.1 + 54953 0.71 0.539647
Target:  5'- cCGCgGGGCgACCgCCGCCGCCg--CUaCCg -3'
miRNA:   3'- -GCG-UCCG-UGG-GGCGGCGGuaaGAaGG- -5'
28832 3' -58.9 NC_006146.1 + 51699 0.71 0.549324
Target:  5'- gGguGGCGgcuCCCgGCCGUCAUUCaUUCg -3'
miRNA:   3'- gCguCCGU---GGGgCGGCGGUAAGaAGG- -5'
28832 3' -58.9 NC_006146.1 + 54609 0.7 0.568833
Target:  5'- cCGCGGGggcgcCAUCCgGCCGCCucUCUggUCCg -3'
miRNA:   3'- -GCGUCC-----GUGGGgCGGCGGuaAGA--AGG- -5'
28832 3' -58.9 NC_006146.1 + 131182 0.7 0.568833
Target:  5'- cCG-AGGC-CCCCGuuGCC-UUCUUCg -3'
miRNA:   3'- -GCgUCCGuGGGGCggCGGuAAGAAGg -5'
28832 3' -58.9 NC_006146.1 + 30768 0.7 0.588511
Target:  5'- --gGGGCAcCCCCGCCaccaccuccGCCAcccccUCUUCCa -3'
miRNA:   3'- gcgUCCGU-GGGGCGG---------CGGUa----AGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 131225 0.7 0.596418
Target:  5'- uGCAGGCccaggAgCCCGCCGCCuccaaggCCa -3'
miRNA:   3'- gCGUCCG-----UgGGGCGGCGGuaagaa-GG- -5'
28832 3' -58.9 NC_006146.1 + 129127 0.7 0.608307
Target:  5'- aGCGGGCGCCCgGgCGCagggCcUCCg -3'
miRNA:   3'- gCGUCCGUGGGgCgGCGguaaGaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.