miRNA display CGI


Results 21 - 40 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28832 3' -58.9 NC_006146.1 + 21303 0.71 0.510984
Target:  5'- aGgAGGCGgccagccuccucUCCCGCCGCCc--CUUCCa -3'
miRNA:   3'- gCgUCCGU------------GGGGCGGCGGuaaGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 21651 0.66 0.841456
Target:  5'- gGCAcGGCAuUCCCGUgGCCAUUga-CCa -3'
miRNA:   3'- gCGU-CCGU-GGGGCGgCGGUAAgaaGG- -5'
28832 3' -58.9 NC_006146.1 + 23174 0.69 0.674788
Target:  5'- uCGC-GGCccgcuauuacccagGCCCCGCCGCC----UUCCu -3'
miRNA:   3'- -GCGuCCG--------------UGGGGCGGCGGuaagAAGG- -5'
28832 3' -58.9 NC_006146.1 + 23727 0.66 0.817011
Target:  5'- gGCgaagGGGCGCCggucugcgCCGCCGCCGggUCaacugCCg -3'
miRNA:   3'- gCG----UCCGUGG--------GGCGGCGGUa-AGaa---GG- -5'
28832 3' -58.9 NC_006146.1 + 28049 0.66 0.825327
Target:  5'- gGCAGGUggcugcaauaGCCaaGCaCGCCAUgggCUUCg -3'
miRNA:   3'- gCGUCCG----------UGGggCG-GCGGUAa--GAAGg -5'
28832 3' -58.9 NC_006146.1 + 28933 0.66 0.841456
Target:  5'- aGCAGcccCGCCCCGCCcgcccgGCCAgagacUCUcCCu -3'
miRNA:   3'- gCGUCc--GUGGGGCGG------CGGUa----AGAaGG- -5'
28832 3' -58.9 NC_006146.1 + 30768 0.7 0.588511
Target:  5'- --gGGGCAcCCCCGCCaccaccuccGCCAcccccUCUUCCa -3'
miRNA:   3'- gcgUCCGU-GGGGCGG---------CGGUa----AGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 31414 0.66 0.841456
Target:  5'- -cCAGGCACCCCcCCggguGCCGUggagacCUUCUc -3'
miRNA:   3'- gcGUCCGUGGGGcGG----CGGUAa-----GAAGG- -5'
28832 3' -58.9 NC_006146.1 + 31452 0.71 0.520472
Target:  5'- uGCAGGCACCCCcCCGggcaCCGUgggggcCUUCUc -3'
miRNA:   3'- gCGUCCGUGGGGcGGC----GGUAa-----GAAGG- -5'
28832 3' -58.9 NC_006146.1 + 31497 0.76 0.305148
Target:  5'- aGCAGGCAccucCCCCGgCGCCGUgggggcCUUCUc -3'
miRNA:   3'- gCGUCCGU----GGGGCgGCGGUAa-----GAAGG- -5'
28832 3' -58.9 NC_006146.1 + 31519 0.66 0.829424
Target:  5'- aGCAGGCgaccauuagaggcuGCUCUGCUGCCAgugaguugCCa -3'
miRNA:   3'- gCGUCCG--------------UGGGGCGGCGGUaagaa---GG- -5'
28832 3' -58.9 NC_006146.1 + 31542 0.72 0.495025
Target:  5'- aGCAGGCACCCCccccggcGCCGCCc--CUaacaucaccagaacaUCCc -3'
miRNA:   3'- gCGUCCGUGGGG-------CGGCGGuaaGA---------------AGG- -5'
28832 3' -58.9 NC_006146.1 + 31748 0.69 0.664903
Target:  5'- -aCAGGCGCCCCcccgggggacgggaGCCcCCGUUCggCCc -3'
miRNA:   3'- gcGUCCGUGGGG--------------CGGcGGUAAGaaGG- -5'
28832 3' -58.9 NC_006146.1 + 31822 0.66 0.841456
Target:  5'- -cCAGGCGaggCCCGUgGCCAaaguccagCUUCCg -3'
miRNA:   3'- gcGUCCGUg--GGGCGgCGGUaa------GAAGG- -5'
28832 3' -58.9 NC_006146.1 + 33169 0.72 0.482975
Target:  5'- gGCuGGGCACCgCCgcGCCGCCGcUCggUCCu -3'
miRNA:   3'- gCG-UCCGUGG-GG--CGGCGGUaAGa-AGG- -5'
28832 3' -58.9 NC_006146.1 + 33293 0.71 0.510984
Target:  5'- gGCuGGGCACCgcugCGCCGCCGcUCggUCCu -3'
miRNA:   3'- gCG-UCCGUGGg---GCGGCGGUaAGa-AGG- -5'
28832 3' -58.9 NC_006146.1 + 33413 0.73 0.455726
Target:  5'- cCGCcuGGGCACCgcugCGCCGCCGcUCggUCCu -3'
miRNA:   3'- -GCG--UCCGUGGg---GCGGCGGUaAGa-AGG- -5'
28832 3' -58.9 NC_006146.1 + 34205 0.72 0.482975
Target:  5'- gGCAGGgACCUcgCGCCGCCcg-CUUCa -3'
miRNA:   3'- gCGUCCgUGGG--GCGGCGGuaaGAAGg -5'
28832 3' -58.9 NC_006146.1 + 39053 0.66 0.80768
Target:  5'- gGCAGGgGCCCUgugaaugGUCGCCGgcCU-CCg -3'
miRNA:   3'- gCGUCCgUGGGG-------CGGCGGUaaGAaGG- -5'
28832 3' -58.9 NC_006146.1 + 41512 0.74 0.378553
Target:  5'- gGCAGGCuuccgGCCCCagaggagGCCGCCg--CUUCCc -3'
miRNA:   3'- gCGUCCG-----UGGGG-------CGGCGGuaaGAAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.