miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28832 3' -58.9 NC_006146.1 + 302 0.68 0.713919
Target:  5'- gGCGGGCccggcgcgcucgccACgCCCaGCUGUCAUUCUcCCg -3'
miRNA:   3'- gCGUCCG--------------UG-GGG-CGGCGGUAAGAaGG- -5'
28832 3' -58.9 NC_006146.1 + 589 0.66 0.841456
Target:  5'- cCGgGGGCGCggCCCGgCGCCAgccCUgCCc -3'
miRNA:   3'- -GCgUCCGUG--GGGCgGCGGUaa-GAaGG- -5'
28832 3' -58.9 NC_006146.1 + 786 0.67 0.791141
Target:  5'- aCGaCGGGaCGCCCCGCCgGCCccccCUgcggcgCCg -3'
miRNA:   3'- -GC-GUCC-GUGGGGCGG-CGGuaa-GAa-----GG- -5'
28832 3' -58.9 NC_006146.1 + 1233 0.67 0.773206
Target:  5'- gGCGGGCcacgcGCgCCCGCCacgcccagcuGUCAUUCUcCCc -3'
miRNA:   3'- gCGUCCG-----UG-GGGCGG----------CGGUAAGAaGG- -5'
28832 3' -58.9 NC_006146.1 + 1520 0.66 0.841456
Target:  5'- cCGgGGGCGCggCCCGgCGCCAgccCUgCCc -3'
miRNA:   3'- -GCgUCCGUG--GGGCgGCGGUaa-GAaGG- -5'
28832 3' -58.9 NC_006146.1 + 1744 0.69 0.62817
Target:  5'- uGCAGGCGCcggccccuCCCGCCgGCCA----UCCc -3'
miRNA:   3'- gCGUCCGUG--------GGGCGG-CGGUaagaAGG- -5'
28832 3' -58.9 NC_006146.1 + 2165 0.67 0.773206
Target:  5'- gGCGGGCcacgcGCgCCCGCCacgcccagcuGUCAUUCUcCCc -3'
miRNA:   3'- gCGUCCG-----UG-GGGCGG----------CGGUAAGAaGG- -5'
28832 3' -58.9 NC_006146.1 + 2452 0.66 0.841456
Target:  5'- cCGgGGGCGCggCCCGgCGCCAgccCUgCCc -3'
miRNA:   3'- -GCgUCCGUG--GGGCgGCGGUaa-GAaGG- -5'
28832 3' -58.9 NC_006146.1 + 2676 0.69 0.62817
Target:  5'- uGCAGGCGCcggccccuCCCGCCgGCCA----UCCc -3'
miRNA:   3'- gCGUCCGUG--------GGGCGG-CGGUaagaAGG- -5'
28832 3' -58.9 NC_006146.1 + 3097 0.67 0.773206
Target:  5'- gGCGGGCcacgcGCgCCCGCCacgcccagcuGUCAUUCUcCCc -3'
miRNA:   3'- gCGUCCG-----UG-GGGCGG----------CGGUAAGAaGG- -5'
28832 3' -58.9 NC_006146.1 + 3384 0.66 0.841456
Target:  5'- cCGgGGGCGCggCCCGgCGCCAgccCUgCCc -3'
miRNA:   3'- -GCgUCCGUG--GGGCgGCGGUaa-GAaGG- -5'
28832 3' -58.9 NC_006146.1 + 3608 0.69 0.62817
Target:  5'- uGCAGGCGCcggccccuCCCGCCgGCCA----UCCc -3'
miRNA:   3'- gCGUCCGUG--------GGGCGG-CGGUaagaAGG- -5'
28832 3' -58.9 NC_006146.1 + 3831 0.69 0.677748
Target:  5'- gGCgGGGCAcCCCCGCUGCC---CUaCCg -3'
miRNA:   3'- gCG-UCCGU-GGGGCGGCGGuaaGAaGG- -5'
28832 3' -58.9 NC_006146.1 + 4379 0.75 0.333428
Target:  5'- cCGCGGGCuCCCCagGCCgacGCCAUgaagauuaUCUUCCg -3'
miRNA:   3'- -GCGUCCGuGGGG--CGG---CGGUA--------AGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 4641 0.69 0.63811
Target:  5'- uGCGGGCccagaacauauACCCCGCCGUCcuggg-CCg -3'
miRNA:   3'- gCGUCCG-----------UGGGGCGGCGGuaagaaGG- -5'
28832 3' -58.9 NC_006146.1 + 9140 0.68 0.726437
Target:  5'- cCGCccAGGCGCCCCcucggaccucaGCCGCCAccc--CCg -3'
miRNA:   3'- -GCG--UCCGUGGGG-----------CGGCGGUaagaaGG- -5'
28832 3' -58.9 NC_006146.1 + 10933 0.66 0.833478
Target:  5'- uGCGGGC-UCCUGCgCGCCA--CcUCCu -3'
miRNA:   3'- gCGUCCGuGGGGCG-GCGGUaaGaAGG- -5'
28832 3' -58.9 NC_006146.1 + 15340 0.76 0.312041
Target:  5'- gGCGGGCGCCCCGCgcgaGCCcggCU-CCa -3'
miRNA:   3'- gCGUCCGUGGGGCGg---CGGuaaGAaGG- -5'
28832 3' -58.9 NC_006146.1 + 15780 0.66 0.825327
Target:  5'- cCGCGGGgACCuuGCCccaCCAgaaggUgUUCCu -3'
miRNA:   3'- -GCGUCCgUGGggCGGc--GGUa----AgAAGG- -5'
28832 3' -58.9 NC_006146.1 + 21249 0.67 0.782237
Target:  5'- uGCAGGCGCgCUGCCgGCgCGUgcUCgaCCu -3'
miRNA:   3'- gCGUCCGUGgGGCGG-CG-GUA--AGaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.