miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28832 3' -58.9 NC_006146.1 + 169673 0.76 0.312041
Target:  5'- gGCGGGCGCgcguggCCCGCCcCCGggUCUUCCc -3'
miRNA:   3'- gCGUCCGUG------GGGCGGcGGUa-AGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 168741 0.76 0.312041
Target:  5'- gGCGGGCGCgcguggCCCGCCcCCGggUCUUCCc -3'
miRNA:   3'- gCGUCCGUG------GGGCGGcGGUa-AGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 167809 0.76 0.312041
Target:  5'- gGCGGGCGCgcguggCCCGCCcCCGggUCUUCCc -3'
miRNA:   3'- gCGUCCGUG------GGGCGGcGGUa-AGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 167081 0.66 0.817011
Target:  5'- gCGgGGGUGCCCCGCCugGCCugac--CCa -3'
miRNA:   3'- -GCgUCCGUGGGGCGG--CGGuaagaaGG- -5'
28832 3' -58.9 NC_006146.1 + 165915 0.69 0.667871
Target:  5'- -aCAGGCACCCCgcguuagugaagGCCGCCAggaggCUcUCg -3'
miRNA:   3'- gcGUCCGUGGGG------------CGGCGGUaa---GAaGG- -5'
28832 3' -58.9 NC_006146.1 + 163464 0.66 0.79991
Target:  5'- uCGCAGGCugCCCuucuuCUGCCGUUg---- -3'
miRNA:   3'- -GCGUCCGugGGGc----GGCGGUAAgaagg -5'
28832 3' -58.9 NC_006146.1 + 162283 0.66 0.825327
Target:  5'- gGCgAGGaCACCCagggGCCGUCGagUCUUUCu -3'
miRNA:   3'- gCG-UCC-GUGGGg---CGGCGGUa-AGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 161956 0.67 0.764056
Target:  5'- aGCAGGCuaaacuuCCCCaGCC-CCAUUUagacaagaaaUUCCu -3'
miRNA:   3'- gCGUCCGu------GGGG-CGGcGGUAAG----------AAGG- -5'
28832 3' -58.9 NC_006146.1 + 161202 0.66 0.817011
Target:  5'- gGCAacuGGCACCCCG-UGCCccaCUUCa -3'
miRNA:   3'- gCGU---CCGUGGGGCgGCGGuaaGAAGg -5'
28832 3' -58.9 NC_006146.1 + 157044 0.7 0.618233
Target:  5'- aCGCuGGCACaCCgGgCCGCCGgggUCccUCCg -3'
miRNA:   3'- -GCGuCCGUG-GGgC-GGCGGUa--AGa-AGG- -5'
28832 3' -58.9 NC_006146.1 + 153966 0.7 0.618233
Target:  5'- aCGCuGGCACaCCgGgCCGCCGgggUCccUCCg -3'
miRNA:   3'- -GCGuCCGUG-GGgC-GGCGGUa--AGa-AGG- -5'
28832 3' -58.9 NC_006146.1 + 153485 0.67 0.754796
Target:  5'- uCGaCGGcGCACaauggCCGCUGCCGUgCUUCUg -3'
miRNA:   3'- -GC-GUC-CGUGg----GGCGGCGGUAaGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 153202 0.67 0.773206
Target:  5'- -cCAGGCGCUUgGCCGCCAcggg-CCg -3'
miRNA:   3'- gcGUCCGUGGGgCGGCGGUaagaaGG- -5'
28832 3' -58.9 NC_006146.1 + 150888 0.7 0.618233
Target:  5'- aCGCuGGCACaCCgGgCCGCCGgggUCccUCCg -3'
miRNA:   3'- -GCGuCCGUG-GGgC-GGCGGUa--AGa-AGG- -5'
28832 3' -58.9 NC_006146.1 + 150177 0.69 0.677748
Target:  5'- gCGCGGGU-CCUCgcagGCCGCCAgcagCUUCUu -3'
miRNA:   3'- -GCGUCCGuGGGG----CGGCGGUaa--GAAGG- -5'
28832 3' -58.9 NC_006146.1 + 149549 0.66 0.833478
Target:  5'- gGCAGGaAgCCCGCCGgCAgccCcUCCg -3'
miRNA:   3'- gCGUCCgUgGGGCGGCgGUaa-GaAGG- -5'
28832 3' -58.9 NC_006146.1 + 147810 0.7 0.618233
Target:  5'- aCGCuGGCACaCCgGgCCGCCGgggUCccUCCg -3'
miRNA:   3'- -GCGuCCGUG-GGgC-GGCGGUa--AGa-AGG- -5'
28832 3' -58.9 NC_006146.1 + 147121 0.76 0.305148
Target:  5'- aGCGGGC-CCCagacgcgcagGCCGCCAUUCUcggCCg -3'
miRNA:   3'- gCGUCCGuGGGg---------CGGCGGUAAGAa--GG- -5'
28832 3' -58.9 NC_006146.1 + 146225 0.66 0.79991
Target:  5'- aGC-GGCGgCCaugGCUGCaGUUCUUCCa -3'
miRNA:   3'- gCGuCCGUgGGg--CGGCGgUAAGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 144732 0.7 0.618233
Target:  5'- aCGCuGGCACaCCgGgCCGCCGgggUCccUCCg -3'
miRNA:   3'- -GCGuCCGUG-GGgC-GGCGGUa--AGa-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.