Results 21 - 40 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28832 | 3' | -58.9 | NC_006146.1 | + | 54953 | 0.71 | 0.539647 |
Target: 5'- cCGCgGGGCgACCgCCGCCGCCg--CUaCCg -3' miRNA: 3'- -GCG-UCCG-UGG-GGCGGCGGuaaGAaGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 31542 | 0.72 | 0.495025 |
Target: 5'- aGCAGGCACCCCccccggcGCCGCCc--CUaacaucaccagaacaUCCc -3' miRNA: 3'- gCGUCCGUGGGG-------CGGCGGuaaGA---------------AGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 48249 | 0.75 | 0.348272 |
Target: 5'- gCGCggaGGGC-CCCCGCCGCCGUcCUggCg -3' miRNA: 3'- -GCG---UCCGuGGGGCGGCGGUAaGAagG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 31497 | 0.76 | 0.305148 |
Target: 5'- aGCAGGCAccucCCCCGgCGCCGUgggggcCUUCUc -3' miRNA: 3'- gCGUCCGU----GGGGCgGCGGUAa-----GAAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 150177 | 0.69 | 0.677748 |
Target: 5'- gCGCGGGU-CCUCgcagGCCGCCAgcagCUUCUu -3' miRNA: 3'- -GCGUCCGuGGGG----CGGCGGUaa--GAAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 61508 | 0.69 | 0.62817 |
Target: 5'- aGgAGGC-CCCUGCCGCCcugUCaUUCa -3' miRNA: 3'- gCgUCCGuGGGGCGGCGGua-AGaAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 34205 | 0.72 | 0.482975 |
Target: 5'- gGCAGGgACCUcgCGCCGCCcg-CUUCa -3' miRNA: 3'- gCGUCCgUGGG--GCGGCGGuaaGAAGg -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 127272 | 0.77 | 0.260159 |
Target: 5'- gGCGGccaCGCCCCGCCGCCcacucccUCUUCCc -3' miRNA: 3'- gCGUCc--GUGGGGCGGCGGua-----AGAAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 129127 | 0.7 | 0.608307 |
Target: 5'- aGCGGGCGCCCgGgCGCagggCcUCCg -3' miRNA: 3'- gCGUCCGUGGGgCgGCGguaaGaAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 106080 | 0.78 | 0.222837 |
Target: 5'- uGCGGGUguuaACCCCcccuguucaccgaaCCGCCAUUCUUCCg -3' miRNA: 3'- gCGUCCG----UGGGGc-------------GGCGGUAAGAAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 138035 | 0.72 | 0.482975 |
Target: 5'- gGCAGGgACCUcgCGCCGCCcg-CUUCa -3' miRNA: 3'- gCGUCCgUGGG--GCGGCGGuaaGAAGg -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 54609 | 0.7 | 0.568833 |
Target: 5'- cCGCGGGggcgcCAUCCgGCCGCCucUCUggUCCg -3' miRNA: 3'- -GCGUCC-----GUGGGgCGGCGGuaAGA--AGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 127841 | 0.73 | 0.438028 |
Target: 5'- uCGCuGGCACCCCucaaCCGCCAggCggcguaUCCg -3' miRNA: 3'- -GCGuCCGUGGGGc---GGCGGUaaGa-----AGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 56588 | 0.75 | 0.355869 |
Target: 5'- gGcCGGGCGCCgagcCCGCCGCCggUCU-CCu -3' miRNA: 3'- gC-GUCCGUGG----GGCGGCGGuaAGAaGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 168741 | 0.76 | 0.312041 |
Target: 5'- gGCGGGCGCgcguggCCCGCCcCCGggUCUUCCc -3' miRNA: 3'- gCGUCCGUG------GGGCGGcGGUa-AGAAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 55480 | 0.76 | 0.305148 |
Target: 5'- cCGCGGGCgagaacgagGCCCgGCCGCCAgcugCcUCCu -3' miRNA: 3'- -GCGUCCG---------UGGGgCGGCGGUaa--GaAGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 55529 | 0.67 | 0.745434 |
Target: 5'- gGCcaGGGCcuccaGCUCCGCCGCCAcgCcggCCa -3' miRNA: 3'- gCG--UCCG-----UGGGGCGGCGGUaaGaa-GG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 9140 | 0.68 | 0.726437 |
Target: 5'- cCGCccAGGCGCCCCcucggaccucaGCCGCCAccc--CCg -3' miRNA: 3'- -GCG--UCCGUGGGG-----------CGGCGGUaagaaGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 113509 | 0.69 | 0.667871 |
Target: 5'- --aGGGgGCCaUgGCCGCCAUUCUaCCa -3' miRNA: 3'- gcgUCCgUGG-GgCGGCGGUAAGAaGG- -5' |
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28832 | 3' | -58.9 | NC_006146.1 | + | 4641 | 0.69 | 0.63811 |
Target: 5'- uGCGGGCccagaacauauACCCCGCCGUCcuggg-CCg -3' miRNA: 3'- gCGUCCG-----------UGGGGCGGCGGuaagaaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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