miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28832 3' -58.9 NC_006146.1 + 162283 0.66 0.825327
Target:  5'- gGCgAGGaCACCCagggGCCGUCGagUCUUUCu -3'
miRNA:   3'- gCG-UCC-GUGGGg---CGGCGGUa-AGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 76812 0.66 0.825327
Target:  5'- gGgGGGUcuacgccuucaGCCaCgGCgGCCAUUCUUCUg -3'
miRNA:   3'- gCgUCCG-----------UGG-GgCGgCGGUAAGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 127626 0.66 0.817011
Target:  5'- gGC-GGCACCgccggcCCGCUGCC--UCUugUCCa -3'
miRNA:   3'- gCGuCCGUGG------GGCGGCGGuaAGA--AGG- -5'
28832 3' -58.9 NC_006146.1 + 167081 0.66 0.817011
Target:  5'- gCGgGGGUGCCCCGCCugGCCugac--CCa -3'
miRNA:   3'- -GCgUCCGUGGGGCGG--CGGuaagaaGG- -5'
28832 3' -58.9 NC_006146.1 + 23727 0.66 0.817011
Target:  5'- gGCgaagGGGCGCCggucugcgCCGCCGCCGggUCaacugCCg -3'
miRNA:   3'- gCG----UCCGUGG--------GGCGGCGGUa-AGaa---GG- -5'
28832 3' -58.9 NC_006146.1 + 161202 0.66 0.817011
Target:  5'- gGCAacuGGCACCCCG-UGCCccaCUUCa -3'
miRNA:   3'- gCGU---CCGUGGGGCgGCGGuaaGAAGg -5'
28832 3' -58.9 NC_006146.1 + 48687 0.66 0.817011
Target:  5'- uCGCcGGCcucCCUCGcCCGCCGcUCcgUCCg -3'
miRNA:   3'- -GCGuCCGu--GGGGC-GGCGGUaAGa-AGG- -5'
28832 3' -58.9 NC_006146.1 + 144017 0.66 0.808536
Target:  5'- aGcCGGGCGaCCCGgCGCUcUUCUUCa -3'
miRNA:   3'- gC-GUCCGUgGGGCgGCGGuAAGAAGg -5'
28832 3' -58.9 NC_006146.1 + 47207 0.66 0.808536
Target:  5'- gCGcCAGGCcCCUgGCCGCC--UCcgCCa -3'
miRNA:   3'- -GC-GUCCGuGGGgCGGCGGuaAGaaGG- -5'
28832 3' -58.9 NC_006146.1 + 55938 0.66 0.808536
Target:  5'- cCGUGGGCugcugcguGCCCC-CCGCCAUcg--CCg -3'
miRNA:   3'- -GCGUCCG--------UGGGGcGGCGGUAagaaGG- -5'
28832 3' -58.9 NC_006146.1 + 67523 0.66 0.808536
Target:  5'- gGCAGGCGCCCUaucucccccaCGCUcgUUaUCCg -3'
miRNA:   3'- gCGUCCGUGGGGcg--------GCGGuaAGaAGG- -5'
28832 3' -58.9 NC_006146.1 + 77006 0.66 0.808536
Target:  5'- uGCuGGCcccCCCUGCCGCaaa--UUCCg -3'
miRNA:   3'- gCGuCCGu--GGGGCGGCGguaagAAGG- -5'
28832 3' -58.9 NC_006146.1 + 119002 0.66 0.808536
Target:  5'- uCGgAGGC-CCCCGCCGaCGcagCcUCCa -3'
miRNA:   3'- -GCgUCCGuGGGGCGGCgGUaa-GaAGG- -5'
28832 3' -58.9 NC_006146.1 + 128833 0.66 0.808536
Target:  5'- aGgGGGuCACCCUGUCGCgAaUCUcCCu -3'
miRNA:   3'- gCgUCC-GUGGGGCGGCGgUaAGAaGG- -5'
28832 3' -58.9 NC_006146.1 + 39053 0.66 0.80768
Target:  5'- gGCAGGgGCCCUgugaaugGUCGCCGgcCU-CCg -3'
miRNA:   3'- gCGUCCgUGGGG-------CGGCGGUaaGAaGG- -5'
28832 3' -58.9 NC_006146.1 + 72907 0.66 0.803378
Target:  5'- gCGCAGuaAUCCUugggugagcuggccaGCCGCCccaUCUUCCc -3'
miRNA:   3'- -GCGUCcgUGGGG---------------CGGCGGua-AGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 146225 0.66 0.79991
Target:  5'- aGC-GGCGgCCaugGCUGCaGUUCUUCCa -3'
miRNA:   3'- gCGuCCGUgGGg--CGGCGgUAAGAAGG- -5'
28832 3' -58.9 NC_006146.1 + 163464 0.66 0.79991
Target:  5'- uCGCAGGCugCCCuucuuCUGCCGUUg---- -3'
miRNA:   3'- -GCGUCCGugGGGc----GGCGGUAAgaagg -5'
28832 3' -58.9 NC_006146.1 + 123379 0.66 0.79904
Target:  5'- gGC-GGCGCCCCcgacacuGCCGCUGUag-UCCc -3'
miRNA:   3'- gCGuCCGUGGGG-------CGGCGGUAagaAGG- -5'
28832 3' -58.9 NC_006146.1 + 42714 0.67 0.791141
Target:  5'- cCGC-GGCGCCCCccuggGCCGCC-----UCCc -3'
miRNA:   3'- -GCGuCCGUGGGG-----CGGCGGuaagaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.