miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28832 5' -55.7 NC_006146.1 + 168372 0.68 0.877938
Target:  5'- -gGGGcgGGgggucgGGCG-GGcAugCUCCGGg -3'
miRNA:   3'- caCCUuaCCa-----CCGCaCC-UugGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 169304 0.68 0.877938
Target:  5'- -gGGGcgGGgggucgGGCG-GGcAugCUCCGGg -3'
miRNA:   3'- caCCUuaCCa-----CCGCaCC-UugGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 170235 0.68 0.877938
Target:  5'- -gGGGcgGGgggucgGGCG-GGcAugCUCCGGg -3'
miRNA:   3'- caCCUuaCCa-----CCGCaCC-UugGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 56367 0.67 0.898118
Target:  5'- -aGGcGUGGUGGCGgagcACCgccgCCGGg -3'
miRNA:   3'- caCCuUACCACCGCaccuUGGa---GGCC- -5'
28832 5' -55.7 NC_006146.1 + 90515 0.67 0.898118
Target:  5'- aUGGAacugAUGGUGGUGaUGaacAACCUcCCGGa -3'
miRNA:   3'- cACCU----UACCACCGC-ACc--UUGGA-GGCC- -5'
28832 5' -55.7 NC_006146.1 + 33648 0.67 0.904399
Target:  5'- gGUGGGGgagGGaggGGUGUGGu-CC-CCGGg -3'
miRNA:   3'- -CACCUUa--CCa--CCGCACCuuGGaGGCC- -5'
28832 5' -55.7 NC_006146.1 + 54226 0.69 0.840106
Target:  5'- -aGG-AUGG-GGCG-GGAgcagaGCCUCUGGg -3'
miRNA:   3'- caCCuUACCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 42279 0.69 0.840106
Target:  5'- -aGGAuggGUGGUGGCGgggaggaGGAGCgggagCCGGa -3'
miRNA:   3'- caCCU---UACCACCGCa------CCUUGga---GGCC- -5'
28832 5' -55.7 NC_006146.1 + 137854 0.69 0.815147
Target:  5'- -cGGggUGGgugGGCGUGucccGGGCCccgccCCGGg -3'
miRNA:   3'- caCCuuACCa--CCGCAC----CUUGGa----GGCC- -5'
28832 5' -55.7 NC_006146.1 + 51895 0.73 0.582316
Target:  5'- gGUGGAGgcUGcGUcGGCG-GGGGCCUCCGa -3'
miRNA:   3'- -CACCUU--AC-CA-CCGCaCCUUGGAGGCc -5'
28832 5' -55.7 NC_006146.1 + 12902 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 15979 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 19057 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 22135 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 25213 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 28291 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 38408 0.72 0.68308
Target:  5'- aUGGggUGGUGGCaucUGGGAUUagCGGg -3'
miRNA:   3'- cACCuuACCACCGc--ACCUUGGagGCC- -5'
28832 5' -55.7 NC_006146.1 + 65504 0.71 0.693064
Target:  5'- cGUGGGGcUGGuUGGUGUGGggUCUUCa- -3'
miRNA:   3'- -CACCUU-ACC-ACCGCACCuuGGAGGcc -5'
28832 5' -55.7 NC_006146.1 + 55019 0.71 0.722685
Target:  5'- -cGGGAUGGgggcgGGCGggaugGGggUCggggCCGGg -3'
miRNA:   3'- caCCUUACCa----CCGCa----CCuuGGa---GGCC- -5'
28832 5' -55.7 NC_006146.1 + 141598 0.7 0.779637
Target:  5'- ------cGGUGGUG-GGAgcaGCCUCCGGa -3'
miRNA:   3'- caccuuaCCACCGCaCCU---UGGAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.