miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28832 5' -55.7 NC_006146.1 + 49592 0.7 0.788729
Target:  5'- gGUGGGgcuGUGGaUGGUGUGGAACacaaUCUGu -3'
miRNA:   3'- -CACCU---UACC-ACCGCACCUUGg---AGGCc -5'
28832 5' -55.7 NC_006146.1 + 145109 0.66 0.927219
Target:  5'- cUGGAGaGG-GGUGaGGAcuuugGCCUCUGGg -3'
miRNA:   3'- cACCUUaCCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 148187 0.66 0.927219
Target:  5'- cUGGAGaGG-GGUGaGGAcuuugGCCUCUGGg -3'
miRNA:   3'- cACCUUaCCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 151265 0.66 0.927219
Target:  5'- cUGGAGaGG-GGUGaGGAcuuugGCCUCUGGg -3'
miRNA:   3'- cACCUUaCCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 40341 0.69 0.815147
Target:  5'- cGUGG--UGGUaGGCGUGGgGAUCUgCGGc -3'
miRNA:   3'- -CACCuuACCA-CCGCACC-UUGGAgGCC- -5'
28832 5' -55.7 NC_006146.1 + 157421 0.66 0.927219
Target:  5'- cUGGAGaGG-GGUGaGGAcuuugGCCUCUGGg -3'
miRNA:   3'- cACCUUaCCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 89942 0.7 0.796795
Target:  5'- gGUGGggUGGUGGguacagGUGGAuugucagauggGCCUggcugggCCGGg -3'
miRNA:   3'- -CACCuuACCACCg-----CACCU-----------UGGA-------GGCC- -5'
28832 5' -55.7 NC_006146.1 + 137225 0.66 0.921862
Target:  5'- -aGGAAgccgGGUGGgGgccUGGggUC-CCGGg -3'
miRNA:   3'- caCCUUa---CCACCgC---ACCuuGGaGGCC- -5'
28832 5' -55.7 NC_006146.1 + 64248 0.67 0.916272
Target:  5'- -gGGGcgGGaggGGCGUGGcuCgCUCCGa -3'
miRNA:   3'- caCCUuaCCa--CCGCACCuuG-GAGGCc -5'
28832 5' -55.7 NC_006146.1 + 148899 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 145821 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 151977 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 155055 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 158134 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 61824 0.68 0.863409
Target:  5'- -aGGGGcgcUGGUGGgggcaGUGGGGCUggugCCGGg -3'
miRNA:   3'- caCCUU---ACCACCg----CACCUUGGa---GGCC- -5'
28832 5' -55.7 NC_006146.1 + 35888 0.68 0.877938
Target:  5'- -gGGggUGGUGGgGUGacgcGGACCa-CGGg -3'
miRNA:   3'- caCCuuACCACCgCAC----CUUGGagGCC- -5'
28832 5' -55.7 NC_006146.1 + 72083 1.09 0.003678
Target:  5'- gGUGGAAUGGUGGCGUGGAACCUCCGGc -3'
miRNA:   3'- -CACCUUACCACCGCACCUUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 100717 0.69 0.840106
Target:  5'- -cGGg--GGUgGGUGUGGGACCggccucgCCGGc -3'
miRNA:   3'- caCCuuaCCA-CCGCACCUUGGa------GGCC- -5'
28832 5' -55.7 NC_006146.1 + 27617 0.67 0.904399
Target:  5'- -cGGGuccacugGGUGGCcagGGAAgUUCCGGg -3'
miRNA:   3'- caCCUua-----CCACCGca-CCUUgGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 33229 0.67 0.910451
Target:  5'- -cGGGAUGG-GGC-UGGggU-UCCGGg -3'
miRNA:   3'- caCCUUACCaCCGcACCuuGgAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.