miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28832 5' -55.7 NC_006146.1 + 146270 0.68 0.855837
Target:  5'- gGUGGAcgcgcgacGUGGcGGCcccaGUGGAGCuCUCCGc -3'
miRNA:   3'- -CACCU--------UACCaCCG----CACCUUG-GAGGCc -5'
28832 5' -55.7 NC_006146.1 + 55019 0.71 0.722685
Target:  5'- -cGGGAUGGgggcgGGCGggaugGGggUCggggCCGGg -3'
miRNA:   3'- caCCUUACCa----CCGCa----CCuuGGa---GGCC- -5'
28832 5' -55.7 NC_006146.1 + 51839 0.66 0.937233
Target:  5'- cGUGGAggGG-GGCucGGGGCCUggcccgagcCCGGg -3'
miRNA:   3'- -CACCUuaCCaCCGcaCCUUGGA---------GGCC- -5'
28832 5' -55.7 NC_006146.1 + 44309 0.67 0.910451
Target:  5'- -cGGuAGUGGgGGC-UGGGGCCguggcagCCGGg -3'
miRNA:   3'- caCC-UUACCaCCGcACCUUGGa------GGCC- -5'
28832 5' -55.7 NC_006146.1 + 47987 0.68 0.870778
Target:  5'- cGUGGGGucagagguggcUGGUGGCG-GGAGgCUUggCGGg -3'
miRNA:   3'- -CACCUU-----------ACCACCGCaCCUUgGAG--GCC- -5'
28832 5' -55.7 NC_006146.1 + 65504 0.71 0.693064
Target:  5'- cGUGGGGcUGGuUGGUGUGGggUCUUCa- -3'
miRNA:   3'- -CACCUU-ACC-ACCGCACCuuGGAGGcc -5'
28832 5' -55.7 NC_006146.1 + 33648 0.67 0.904399
Target:  5'- gGUGGGGgagGGaggGGUGUGGu-CC-CCGGg -3'
miRNA:   3'- -CACCUUa--CCa--CCGCACCuuGGaGGCC- -5'
28832 5' -55.7 NC_006146.1 + 38408 0.72 0.68308
Target:  5'- aUGGggUGGUGGCaucUGGGAUUagCGGg -3'
miRNA:   3'- cACCuuACCACCGc--ACCUUGGagGCC- -5'
28832 5' -55.7 NC_006146.1 + 28291 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 167440 0.68 0.877938
Target:  5'- -gGGGcgGGgggucgGGCG-GGcAugCUCCGGg -3'
miRNA:   3'- caCCUuaCCa-----CCGCaCC-UugGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 33835 0.67 0.916272
Target:  5'- gGUGGGGgagGGaggGGUGUGGu-CC-CCGGa -3'
miRNA:   3'- -CACCUUa--CCa--CCGCACCuuGGaGGCC- -5'
28832 5' -55.7 NC_006146.1 + 54226 0.69 0.840106
Target:  5'- -aGG-AUGG-GGCG-GGAgcagaGCCUCUGGg -3'
miRNA:   3'- caCCuUACCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 141598 0.7 0.779637
Target:  5'- ------cGGUGGUG-GGAgcaGCCUCCGGa -3'
miRNA:   3'- caccuuaCCACCGCaCCU---UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 170235 0.68 0.877938
Target:  5'- -gGGGcgGGgggucgGGCG-GGcAugCUCCGGg -3'
miRNA:   3'- caCCUuaCCa-----CCGCaCC-UugGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 131542 0.67 0.910451
Target:  5'- aGUGGGAcguuUGGUGGU--GGGACg-CCGGg -3'
miRNA:   3'- -CACCUU----ACCACCGcaCCUUGgaGGCC- -5'
28832 5' -55.7 NC_006146.1 + 27617 0.67 0.904399
Target:  5'- -cGGGuccacugGGUGGCcagGGAAgUUCCGGg -3'
miRNA:   3'- caCCUua-----CCACCGca-CCUUgGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 33229 0.67 0.910451
Target:  5'- -cGGGAUGG-GGC-UGGggU-UCCGGg -3'
miRNA:   3'- caCCUUACCaCCGcACCuuGgAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 89942 0.7 0.796795
Target:  5'- gGUGGggUGGUGGguacagGUGGAuugucagauggGCCUggcugggCCGGg -3'
miRNA:   3'- -CACCuuACCACCg-----CACCU-----------UGGA-------GGCC- -5'
28832 5' -55.7 NC_006146.1 + 40341 0.69 0.815147
Target:  5'- cGUGG--UGGUaGGCGUGGgGAUCUgCGGc -3'
miRNA:   3'- -CACCuuACCA-CCGCACC-UUGGAgGCC- -5'
28832 5' -55.7 NC_006146.1 + 67591 0.69 0.806492
Target:  5'- uUGGGGggcccGUGGCGUuuGGCCUCCGGu -3'
miRNA:   3'- cACCUUac---CACCGCAccUUGGAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.