miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28832 5' -55.7 NC_006146.1 + 49592 0.7 0.788729
Target:  5'- gGUGGGgcuGUGGaUGGUGUGGAACacaaUCUGu -3'
miRNA:   3'- -CACCU---UACC-ACCGCACCUUGg---AGGCc -5'
28832 5' -55.7 NC_006146.1 + 51839 0.66 0.937233
Target:  5'- cGUGGAggGG-GGCucGGGGCCUggcccgagcCCGGg -3'
miRNA:   3'- -CACCUuaCCaCCGcaCCUUGGA---------GGCC- -5'
28832 5' -55.7 NC_006146.1 + 51895 0.73 0.582316
Target:  5'- gGUGGAGgcUGcGUcGGCG-GGGGCCUCCGa -3'
miRNA:   3'- -CACCUU--AC-CA-CCGCaCCUUGGAGGCc -5'
28832 5' -55.7 NC_006146.1 + 54226 0.69 0.840106
Target:  5'- -aGG-AUGG-GGCG-GGAgcagaGCCUCUGGg -3'
miRNA:   3'- caCCuUACCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 55019 0.71 0.722685
Target:  5'- -cGGGAUGGgggcgGGCGggaugGGggUCggggCCGGg -3'
miRNA:   3'- caCCUUACCa----CCGCa----CCuuGGa---GGCC- -5'
28832 5' -55.7 NC_006146.1 + 56367 0.67 0.898118
Target:  5'- -aGGcGUGGUGGCGgagcACCgccgCCGGg -3'
miRNA:   3'- caCCuUACCACCGCaccuUGGa---GGCC- -5'
28832 5' -55.7 NC_006146.1 + 61824 0.68 0.863409
Target:  5'- -aGGGGcgcUGGUGGgggcaGUGGGGCUggugCCGGg -3'
miRNA:   3'- caCCUU---ACCACCg----CACCUUGGa---GGCC- -5'
28832 5' -55.7 NC_006146.1 + 64248 0.67 0.916272
Target:  5'- -gGGGcgGGaggGGCGUGGcuCgCUCCGa -3'
miRNA:   3'- caCCUuaCCa--CCGCACCuuG-GAGGCc -5'
28832 5' -55.7 NC_006146.1 + 65504 0.71 0.693064
Target:  5'- cGUGGGGcUGGuUGGUGUGGggUCUUCa- -3'
miRNA:   3'- -CACCUU-ACC-ACCGCACCuuGGAGGcc -5'
28832 5' -55.7 NC_006146.1 + 67591 0.69 0.806492
Target:  5'- uUGGGGggcccGUGGCGUuuGGCCUCCGGu -3'
miRNA:   3'- cACCUUac---CACCGCAccUUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 71997 0.68 0.870778
Target:  5'- uUGGcGUGGUcaaCGUGGggUCUUCGGg -3'
miRNA:   3'- cACCuUACCAcc-GCACCuuGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 72083 1.09 0.003678
Target:  5'- gGUGGAAUGGUGGCGUGGAACCUCCGGc -3'
miRNA:   3'- -CACCUUACCACCGCACCUUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 73559 0.66 0.927219
Target:  5'- -cGGGcgGGUGGuUGUGGccgGAcgccauccucuCCUCCGGu -3'
miRNA:   3'- caCCUuaCCACC-GCACC---UU-----------GGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 80317 0.67 0.904399
Target:  5'- -aGGucGUGGUuuGGCGacUGGGGCCUucucCCGGg -3'
miRNA:   3'- caCCu-UACCA--CCGC--ACCUUGGA----GGCC- -5'
28832 5' -55.7 NC_006146.1 + 88137 0.66 0.921862
Target:  5'- -cGGAAUGG-GGCGcaaaGGGGCUUCacgaGGu -3'
miRNA:   3'- caCCUUACCaCCGCa---CCUUGGAGg---CC- -5'
28832 5' -55.7 NC_006146.1 + 89942 0.7 0.796795
Target:  5'- gGUGGggUGGUGGguacagGUGGAuugucagauggGCCUggcugggCCGGg -3'
miRNA:   3'- -CACCuuACCACCg-----CACCU-----------UGGA-------GGCC- -5'
28832 5' -55.7 NC_006146.1 + 90515 0.67 0.898118
Target:  5'- aUGGAacugAUGGUGGUGaUGaacAACCUcCCGGa -3'
miRNA:   3'- cACCU----UACCACCGC-ACc--UUGGA-GGCC- -5'
28832 5' -55.7 NC_006146.1 + 97436 0.68 0.884884
Target:  5'- -cGGA--GGUGGa-UGGAACCUCCu- -3'
miRNA:   3'- caCCUuaCCACCgcACCUUGGAGGcc -5'
28832 5' -55.7 NC_006146.1 + 100717 0.69 0.840106
Target:  5'- -cGGg--GGUgGGUGUGGGACCggccucgCCGGc -3'
miRNA:   3'- caCCuuaCCA-CCGCACCUUGGa------GGCC- -5'
28832 5' -55.7 NC_006146.1 + 108559 0.66 0.941891
Target:  5'- uUGGAGUGGcugggcuuggcUGGCGgcGGcgUCUCUGGc -3'
miRNA:   3'- cACCUUACC-----------ACCGCa-CCuuGGAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.