Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28832 | 5' | -55.7 | NC_006146.1 | + | 141598 | 0.7 | 0.779637 |
Target: 5'- ------cGGUGGUG-GGAgcaGCCUCCGGa -3' miRNA: 3'- caccuuaCCACCGCaCCU---UGGAGGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 140131 | 0.75 | 0.494274 |
Target: 5'- gGUGGcggaGGUGGUGGCGgGGGugCcCCGGg -3' miRNA: 3'- -CACC----UUACCACCGCaCCUugGaGGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 137854 | 0.69 | 0.815147 |
Target: 5'- -cGGggUGGgugGGCGUGucccGGGCCccgccCCGGg -3' miRNA: 3'- caCCuuACCa--CCGCAC----CUUGGa----GGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 137225 | 0.66 | 0.921862 |
Target: 5'- -aGGAAgccgGGUGGgGgccUGGggUC-CCGGg -3' miRNA: 3'- caCCUUa---CCACCgC---ACCuuGGaGGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 132945 | 0.67 | 0.910451 |
Target: 5'- -cGGAggGGgggGGUgGUGGAuuAUCUCUGGg -3' miRNA: 3'- caCCUuaCCa--CCG-CACCU--UGGAGGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 131542 | 0.67 | 0.910451 |
Target: 5'- aGUGGGAcguuUGGUGGU--GGGACg-CCGGg -3' miRNA: 3'- -CACCUU----ACCACCGcaCCUUGgaGGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 126008 | 0.68 | 0.863409 |
Target: 5'- -gGGAGUGGgGGCgGUGGGcuucugcuGCUgggCCGGg -3' miRNA: 3'- caCCUUACCaCCG-CACCU--------UGGa--GGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 114443 | 0.66 | 0.927219 |
Target: 5'- uUGGAcucuagcuuaAUGGUGGCGUGcucucuGCCaaauaCCGGg -3' miRNA: 3'- cACCU----------UACCACCGCACcu----UGGa----GGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 113740 | 0.66 | 0.927219 |
Target: 5'- cUGGggUGaGgaaGGCGUGGAAgCggCGGu -3' miRNA: 3'- cACCuuAC-Ca--CCGCACCUUgGagGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 108559 | 0.66 | 0.941891 |
Target: 5'- uUGGAGUGGcugggcuuggcUGGCGgcGGcgUCUCUGGc -3' miRNA: 3'- cACCUUACC-----------ACCGCa-CCuuGGAGGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 100717 | 0.69 | 0.840106 |
Target: 5'- -cGGg--GGUgGGUGUGGGACCggccucgCCGGc -3' miRNA: 3'- caCCuuaCCA-CCGCACCUUGGa------GGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 97436 | 0.68 | 0.884884 |
Target: 5'- -cGGA--GGUGGa-UGGAACCUCCu- -3' miRNA: 3'- caCCUuaCCACCgcACCUUGGAGGcc -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 90515 | 0.67 | 0.898118 |
Target: 5'- aUGGAacugAUGGUGGUGaUGaacAACCUcCCGGa -3' miRNA: 3'- cACCU----UACCACCGC-ACc--UUGGA-GGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 89942 | 0.7 | 0.796795 |
Target: 5'- gGUGGggUGGUGGguacagGUGGAuugucagauggGCCUggcugggCCGGg -3' miRNA: 3'- -CACCuuACCACCg-----CACCU-----------UGGA-------GGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 88137 | 0.66 | 0.921862 |
Target: 5'- -cGGAAUGG-GGCGcaaaGGGGCUUCacgaGGu -3' miRNA: 3'- caCCUUACCaCCGCa---CCUUGGAGg---CC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 80317 | 0.67 | 0.904399 |
Target: 5'- -aGGucGUGGUuuGGCGacUGGGGCCUucucCCGGg -3' miRNA: 3'- caCCu-UACCA--CCGC--ACCUUGGA----GGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 73559 | 0.66 | 0.927219 |
Target: 5'- -cGGGcgGGUGGuUGUGGccgGAcgccauccucuCCUCCGGu -3' miRNA: 3'- caCCUuaCCACC-GCACC---UU-----------GGAGGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 72083 | 1.09 | 0.003678 |
Target: 5'- gGUGGAAUGGUGGCGUGGAACCUCCGGc -3' miRNA: 3'- -CACCUUACCACCGCACCUUGGAGGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 71997 | 0.68 | 0.870778 |
Target: 5'- uUGGcGUGGUcaaCGUGGggUCUUCGGg -3' miRNA: 3'- cACCuUACCAcc-GCACCuuGGAGGCC- -5' |
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28832 | 5' | -55.7 | NC_006146.1 | + | 67591 | 0.69 | 0.806492 |
Target: 5'- uUGGGGggcccGUGGCGUuuGGCCUCCGGu -3' miRNA: 3'- cACCUUac---CACCGCAccUUGGAGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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