miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28832 5' -55.7 NC_006146.1 + 137854 0.69 0.815147
Target:  5'- -cGGggUGGgugGGCGUGucccGGGCCccgccCCGGg -3'
miRNA:   3'- caCCuuACCa--CCGCAC----CUUGGa----GGCC- -5'
28832 5' -55.7 NC_006146.1 + 54226 0.69 0.840106
Target:  5'- -aGG-AUGG-GGCG-GGAgcagaGCCUCUGGg -3'
miRNA:   3'- caCCuUACCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 100717 0.69 0.840106
Target:  5'- -cGGg--GGUgGGUGUGGGACCggccucgCCGGc -3'
miRNA:   3'- caCCuuaCCA-CCGCACCUUGGa------GGCC- -5'
28832 5' -55.7 NC_006146.1 + 42279 0.69 0.840106
Target:  5'- -aGGAuggGUGGUGGCGgggaggaGGAGCgggagCCGGa -3'
miRNA:   3'- caCCU---UACCACCGCa------CCUUGga---GGCC- -5'
28832 5' -55.7 NC_006146.1 + 33481 0.68 0.848067
Target:  5'- -cGGGAaGGgaggGGCGUGGu-CC-CCGGg -3'
miRNA:   3'- caCCUUaCCa---CCGCACCuuGGaGGCC- -5'
28832 5' -55.7 NC_006146.1 + 155055 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 142743 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 145821 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 148899 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 151977 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 158134 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 146270 0.68 0.855837
Target:  5'- gGUGGAcgcgcgacGUGGcGGCcccaGUGGAGCuCUCCGc -3'
miRNA:   3'- -CACCU--------UACCaCCG----CACCUUG-GAGGCc -5'
28832 5' -55.7 NC_006146.1 + 61824 0.68 0.863409
Target:  5'- -aGGGGcgcUGGUGGgggcaGUGGGGCUggugCCGGg -3'
miRNA:   3'- caCCUU---ACCACCg----CACCUUGGa---GGCC- -5'
28832 5' -55.7 NC_006146.1 + 126008 0.68 0.863409
Target:  5'- -gGGAGUGGgGGCgGUGGGcuucugcuGCUgggCCGGg -3'
miRNA:   3'- caCCUUACCaCCG-CACCU--------UGGa--GGCC- -5'
28832 5' -55.7 NC_006146.1 + 71997 0.68 0.870778
Target:  5'- uUGGcGUGGUcaaCGUGGggUCUUCGGg -3'
miRNA:   3'- cACCuUACCAcc-GCACCuuGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 47987 0.68 0.870778
Target:  5'- cGUGGGGucagagguggcUGGUGGCG-GGAGgCUUggCGGg -3'
miRNA:   3'- -CACCUU-----------ACCACCGCaCCUUgGAG--GCC- -5'
28832 5' -55.7 NC_006146.1 + 167440 0.68 0.877938
Target:  5'- -gGGGcgGGgggucgGGCG-GGcAugCUCCGGg -3'
miRNA:   3'- caCCUuaCCa-----CCGCaCC-UugGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 169304 0.68 0.877938
Target:  5'- -gGGGcgGGgggucgGGCG-GGcAugCUCCGGg -3'
miRNA:   3'- caCCUuaCCa-----CCGCaCC-UugGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 35888 0.68 0.877938
Target:  5'- -gGGggUGGUGGgGUGacgcGGACCa-CGGg -3'
miRNA:   3'- caCCuuACCACCgCAC----CUUGGagGCC- -5'
28832 5' -55.7 NC_006146.1 + 168372 0.68 0.877938
Target:  5'- -gGGGcgGGgggucgGGCG-GGcAugCUCCGGg -3'
miRNA:   3'- caCCUuaCCa-----CCGCaCC-UugGAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.