miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28832 5' -55.7 NC_006146.1 + 132945 0.67 0.910451
Target:  5'- -cGGAggGGgggGGUgGUGGAuuAUCUCUGGg -3'
miRNA:   3'- caCCUuaCCa--CCG-CACCU--UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 80317 0.67 0.904399
Target:  5'- -aGGucGUGGUuuGGCGacUGGGGCCUucucCCGGg -3'
miRNA:   3'- caCCu-UACCA--CCGC--ACCUUGGA----GGCC- -5'
28832 5' -55.7 NC_006146.1 + 27617 0.67 0.904399
Target:  5'- -cGGGuccacugGGUGGCcagGGAAgUUCCGGg -3'
miRNA:   3'- caCCUua-----CCACCGca-CCUUgGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 33835 0.67 0.916272
Target:  5'- gGUGGGGgagGGaggGGUGUGGu-CC-CCGGa -3'
miRNA:   3'- -CACCUUa--CCa--CCGCACCuuGGaGGCC- -5'
28832 5' -55.7 NC_006146.1 + 44309 0.67 0.910451
Target:  5'- -cGGuAGUGGgGGC-UGGGGCCguggcagCCGGg -3'
miRNA:   3'- caCC-UUACCaCCGcACCUUGGa------GGCC- -5'
28832 5' -55.7 NC_006146.1 + 33229 0.67 0.910451
Target:  5'- -cGGGAUGG-GGC-UGGggU-UCCGGg -3'
miRNA:   3'- caCCUUACCaCCGcACCuuGgAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 64248 0.67 0.916272
Target:  5'- -gGGGcgGGaggGGCGUGGcuCgCUCCGa -3'
miRNA:   3'- caCCUuaCCa--CCGCACCuuG-GAGGCc -5'
28832 5' -55.7 NC_006146.1 + 169304 0.68 0.877938
Target:  5'- -gGGGcgGGgggucgGGCG-GGcAugCUCCGGg -3'
miRNA:   3'- caCCUuaCCa-----CCGCaCC-UugGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 167440 0.68 0.877938
Target:  5'- -gGGGcgGGgggucgGGCG-GGcAugCUCCGGg -3'
miRNA:   3'- caCCUuaCCa-----CCGCaCC-UugGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 126008 0.68 0.863409
Target:  5'- -gGGAGUGGgGGCgGUGGGcuucugcuGCUgggCCGGg -3'
miRNA:   3'- caCCUUACCaCCG-CACCU--------UGGa--GGCC- -5'
28832 5' -55.7 NC_006146.1 + 33481 0.68 0.848067
Target:  5'- -cGGGAaGGgaggGGCGUGGu-CC-CCGGg -3'
miRNA:   3'- caCCUUaCCa---CCGCACCuuGGaGGCC- -5'
28832 5' -55.7 NC_006146.1 + 47987 0.68 0.870778
Target:  5'- cGUGGGGucagagguggcUGGUGGCG-GGAGgCUUggCGGg -3'
miRNA:   3'- -CACCUU-----------ACCACCGCaCCUUgGAG--GCC- -5'
28832 5' -55.7 NC_006146.1 + 151977 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 170235 0.68 0.877938
Target:  5'- -gGGGcgGGgggucgGGCG-GGcAugCUCCGGg -3'
miRNA:   3'- caCCUuaCCa-----CCGCaCC-UugGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 97436 0.68 0.884884
Target:  5'- -cGGA--GGUGGa-UGGAACCUCCu- -3'
miRNA:   3'- caCCUuaCCACCgcACCUUGGAGGcc -5'
28832 5' -55.7 NC_006146.1 + 158134 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 155055 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 142743 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 145821 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 148899 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.