miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28832 5' -55.7 NC_006146.1 + 170235 0.68 0.877938
Target:  5'- -gGGGcgGGgggucgGGCG-GGcAugCUCCGGg -3'
miRNA:   3'- caCCUuaCCa-----CCGCaCC-UugGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 170083 0.67 0.910451
Target:  5'- -gGGGAUGGccGGCGggaGGGGCCggcgCCGc -3'
miRNA:   3'- caCCUUACCa-CCGCa--CCUUGGa---GGCc -5'
28832 5' -55.7 NC_006146.1 + 169304 0.68 0.877938
Target:  5'- -gGGGcgGGgggucgGGCG-GGcAugCUCCGGg -3'
miRNA:   3'- caCCUuaCCa-----CCGCaCC-UugGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 168372 0.68 0.877938
Target:  5'- -gGGGcgGGgggucgGGCG-GGcAugCUCCGGg -3'
miRNA:   3'- caCCUuaCCa-----CCGCaCC-UugGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 167440 0.68 0.877938
Target:  5'- -gGGGcgGGgggucgGGCG-GGcAugCUCCGGg -3'
miRNA:   3'- caCCUuaCCa-----CCGCaCC-UugGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 161729 0.66 0.921862
Target:  5'- uUGGGGgugGGUGGCacggugGGAGCCcgCCGu -3'
miRNA:   3'- cACCUUa--CCACCGca----CCUUGGa-GGCc -5'
28832 5' -55.7 NC_006146.1 + 158134 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 157421 0.66 0.927219
Target:  5'- cUGGAGaGG-GGUGaGGAcuuugGCCUCUGGg -3'
miRNA:   3'- cACCUUaCCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 155055 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 154343 0.66 0.927219
Target:  5'- cUGGAGaGG-GGUGaGGAcuuugGCCUCUGGg -3'
miRNA:   3'- cACCUUaCCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 153529 0.76 0.430201
Target:  5'- aUGGAGUGGggGGCGUGGGGCugCUUgGGa -3'
miRNA:   3'- cACCUUACCa-CCGCACCUUG--GAGgCC- -5'
28832 5' -55.7 NC_006146.1 + 151977 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 151265 0.66 0.927219
Target:  5'- cUGGAGaGG-GGUGaGGAcuuugGCCUCUGGg -3'
miRNA:   3'- cACCUUaCCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 148899 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 148187 0.66 0.927219
Target:  5'- cUGGAGaGG-GGUGaGGAcuuugGCCUCUGGg -3'
miRNA:   3'- cACCUUaCCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 146270 0.68 0.855837
Target:  5'- gGUGGAcgcgcgacGUGGcGGCcccaGUGGAGCuCUCCGc -3'
miRNA:   3'- -CACCU--------UACCaCCG----CACCUUG-GAGGCc -5'
28832 5' -55.7 NC_006146.1 + 145821 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 145109 0.66 0.927219
Target:  5'- cUGGAGaGG-GGUGaGGAcuuugGCCUCUGGg -3'
miRNA:   3'- cACCUUaCCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 142743 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 142031 0.66 0.927219
Target:  5'- cUGGAGaGG-GGUGaGGAcuuugGCCUCUGGg -3'
miRNA:   3'- cACCUUaCCaCCGCaCCU-----UGGAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.