miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28832 5' -55.7 NC_006146.1 + 153529 0.76 0.430201
Target:  5'- aUGGAGUGGggGGCGUGGGGCugCUUgGGa -3'
miRNA:   3'- cACCUUACCa-CCGCACCUUG--GAGgCC- -5'
28832 5' -55.7 NC_006146.1 + 126008 0.68 0.863409
Target:  5'- -gGGAGUGGgGGCgGUGGGcuucugcuGCUgggCCGGg -3'
miRNA:   3'- caCCUUACCaCCG-CACCU--------UGGa--GGCC- -5'
28832 5' -55.7 NC_006146.1 + 47987 0.68 0.870778
Target:  5'- cGUGGGGucagagguggcUGGUGGCG-GGAGgCUUggCGGg -3'
miRNA:   3'- -CACCUU-----------ACCACCGCaCCUUgGAG--GCC- -5'
28832 5' -55.7 NC_006146.1 + 51839 0.66 0.937233
Target:  5'- cGUGGAggGG-GGCucGGGGCCUggcccgagcCCGGg -3'
miRNA:   3'- -CACCUuaCCaCCGcaCCUUGGA---------GGCC- -5'
28832 5' -55.7 NC_006146.1 + 19057 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 22135 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 28291 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 38408 0.72 0.68308
Target:  5'- aUGGggUGGUGGCaucUGGGAUUagCGGg -3'
miRNA:   3'- cACCuuACCACCGc--ACCUUGGagGCC- -5'
28832 5' -55.7 NC_006146.1 + 141598 0.7 0.779637
Target:  5'- ------cGGUGGUG-GGAgcaGCCUCCGGa -3'
miRNA:   3'- caccuuaCCACCGCaCCU---UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 146270 0.68 0.855837
Target:  5'- gGUGGAcgcgcgacGUGGcGGCcccaGUGGAGCuCUCCGc -3'
miRNA:   3'- -CACCU--------UACCaCCG----CACCUUG-GAGGCc -5'
28832 5' -55.7 NC_006146.1 + 42279 0.69 0.840106
Target:  5'- -aGGAuggGUGGUGGCGgggaggaGGAGCgggagCCGGa -3'
miRNA:   3'- caCCU---UACCACCGCa------CCUUGga---GGCC- -5'
28832 5' -55.7 NC_006146.1 + 55019 0.71 0.722685
Target:  5'- -cGGGAUGGgggcgGGCGggaugGGggUCggggCCGGg -3'
miRNA:   3'- caCCUUACCa----CCGCa----CCuuGGa---GGCC- -5'
28832 5' -55.7 NC_006146.1 + 51895 0.73 0.582316
Target:  5'- gGUGGAGgcUGcGUcGGCG-GGGGCCUCCGa -3'
miRNA:   3'- -CACCUU--AC-CA-CCGCaCCUUGGAGGCc -5'
28832 5' -55.7 NC_006146.1 + 54226 0.69 0.840106
Target:  5'- -aGG-AUGG-GGCG-GGAgcagaGCCUCUGGg -3'
miRNA:   3'- caCCuUACCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 12902 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 65504 0.71 0.693064
Target:  5'- cGUGGGGcUGGuUGGUGUGGggUCUUCa- -3'
miRNA:   3'- -CACCUU-ACC-ACCGCACCuuGGAGGcc -5'
28832 5' -55.7 NC_006146.1 + 33481 0.68 0.848067
Target:  5'- -cGGGAaGGgaggGGCGUGGu-CC-CCGGg -3'
miRNA:   3'- caCCUUaCCa---CCGCACCuuGGaGGCC- -5'
28832 5' -55.7 NC_006146.1 + 71997 0.68 0.870778
Target:  5'- uUGGcGUGGUcaaCGUGGggUCUUCGGg -3'
miRNA:   3'- cACCuUACCAcc-GCACCuuGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 15979 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 25213 0.73 0.632709
Target:  5'- cUGGGggucuGUGGUGGUGagccUGGuGCCUCUGGa -3'
miRNA:   3'- cACCU-----UACCACCGC----ACCuUGGAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.