miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28832 5' -55.7 NC_006146.1 + 155055 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 64248 0.67 0.916272
Target:  5'- -gGGGcgGGaggGGCGUGGcuCgCUCCGa -3'
miRNA:   3'- caCCUuaCCa--CCGCACCuuG-GAGGCc -5'
28832 5' -55.7 NC_006146.1 + 33229 0.67 0.910451
Target:  5'- -cGGGAUGG-GGC-UGGggU-UCCGGg -3'
miRNA:   3'- caCCUUACCaCCGcACCuuGgAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 27617 0.67 0.904399
Target:  5'- -cGGGuccacugGGUGGCcagGGAAgUUCCGGg -3'
miRNA:   3'- caCCUua-----CCACCGca-CCUUgGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 80317 0.67 0.904399
Target:  5'- -aGGucGUGGUuuGGCGacUGGGGCCUucucCCGGg -3'
miRNA:   3'- caCCu-UACCA--CCGC--ACCUUGGA----GGCC- -5'
28832 5' -55.7 NC_006146.1 + 97436 0.68 0.884884
Target:  5'- -cGGA--GGUGGa-UGGAACCUCCu- -3'
miRNA:   3'- caCCUuaCCACCgcACCUUGGAGGcc -5'
28832 5' -55.7 NC_006146.1 + 35888 0.68 0.877938
Target:  5'- -gGGggUGGUGGgGUGacgcGGACCa-CGGg -3'
miRNA:   3'- caCCuuACCACCgCAC----CUUGGagGCC- -5'
28832 5' -55.7 NC_006146.1 + 61824 0.68 0.863409
Target:  5'- -aGGGGcgcUGGUGGgggcaGUGGGGCUggugCCGGg -3'
miRNA:   3'- caCCUU---ACCACCg----CACCUUGGa---GGCC- -5'
28832 5' -55.7 NC_006146.1 + 158134 0.68 0.848067
Target:  5'- uUGGGAccUGGUGGCGcccgccGGcuccaaccucgGGCCUCUGGg -3'
miRNA:   3'- cACCUU--ACCACCGCa-----CC-----------UUGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 137225 0.66 0.921862
Target:  5'- -aGGAAgccgGGUGGgGgccUGGggUC-CCGGg -3'
miRNA:   3'- caCCUUa---CCACCgC---ACCuuGGaGGCC- -5'
28832 5' -55.7 NC_006146.1 + 88137 0.66 0.921862
Target:  5'- -cGGAAUGG-GGCGcaaaGGGGCUUCacgaGGu -3'
miRNA:   3'- caCCUUACCaCCGCa---CCUUGGAGg---CC- -5'
28832 5' -55.7 NC_006146.1 + 73559 0.66 0.927219
Target:  5'- -cGGGcgGGUGGuUGUGGccgGAcgccauccucuCCUCCGGu -3'
miRNA:   3'- caCCUuaCCACC-GCACC---UU-----------GGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 108559 0.66 0.941891
Target:  5'- uUGGAGUGGcugggcuuggcUGGCGgcGGcgUCUCUGGc -3'
miRNA:   3'- cACCUUACC-----------ACCGCa-CCuuGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 157421 0.66 0.927219
Target:  5'- cUGGAGaGG-GGUGaGGAcuuugGCCUCUGGg -3'
miRNA:   3'- cACCUUaCCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 154343 0.66 0.927219
Target:  5'- cUGGAGaGG-GGUGaGGAcuuugGCCUCUGGg -3'
miRNA:   3'- cACCUUaCCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 151265 0.66 0.927219
Target:  5'- cUGGAGaGG-GGUGaGGAcuuugGCCUCUGGg -3'
miRNA:   3'- cACCUUaCCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 148187 0.66 0.927219
Target:  5'- cUGGAGaGG-GGUGaGGAcuuugGCCUCUGGg -3'
miRNA:   3'- cACCUUaCCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 145109 0.66 0.927219
Target:  5'- cUGGAGaGG-GGUGaGGAcuuugGCCUCUGGg -3'
miRNA:   3'- cACCUUaCCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 142031 0.66 0.927219
Target:  5'- cUGGAGaGG-GGUGaGGAcuuugGCCUCUGGg -3'
miRNA:   3'- cACCUUaCCaCCGCaCCU-----UGGAGGCC- -5'
28832 5' -55.7 NC_006146.1 + 113740 0.66 0.927219
Target:  5'- cUGGggUGaGgaaGGCGUGGAAgCggCGGu -3'
miRNA:   3'- cACCuuAC-Ca--CCGCACCUUgGagGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.