miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28836 5' -51.7 NC_006146.1 + 72559 0.67 0.972258
Target:  5'- uCUCCUGGAccgggacGGGCC-GCGCccggccccgugccAGACGGCc -3'
miRNA:   3'- -GAGGACCU-------UUCGGaUGCG-------------UCUGUUGu -5'
28836 5' -51.7 NC_006146.1 + 73995 0.69 0.933206
Target:  5'- aCUCCUGGAAacugaccaccacGGCCUcACGCuGGAgAAUg -3'
miRNA:   3'- -GAGGACCUU------------UCGGA-UGCG-UCUgUUGu -5'
28836 5' -51.7 NC_006146.1 + 74760 0.67 0.982471
Target:  5'- cCUCC-GGggGGCCaagACGCAGGa---- -3'
miRNA:   3'- -GAGGaCCuuUCGGa--UGCGUCUguugu -5'
28836 5' -51.7 NC_006146.1 + 76091 0.7 0.924583
Target:  5'- uUCCUGGuggGcaacccccgggccucGGCCUACGUGGACGugGc -3'
miRNA:   3'- gAGGACCu--U---------------UCGGAUGCGUCUGUugU- -5'
28836 5' -51.7 NC_006146.1 + 78811 0.76 0.607832
Target:  5'- -cCCUGGGAGGCCcACGCguccAGGCAGCc -3'
miRNA:   3'- gaGGACCUUUCGGaUGCG----UCUGUUGu -5'
28836 5' -51.7 NC_006146.1 + 84857 0.71 0.883647
Target:  5'- --gCUGGAgGAGCCgACGgAGACAGCGg -3'
miRNA:   3'- gagGACCU-UUCGGaUGCgUCUGUUGU- -5'
28836 5' -51.7 NC_006146.1 + 85934 0.69 0.951937
Target:  5'- -gCCUGGAuGGCCUGCG-GGACuuuGCc -3'
miRNA:   3'- gaGGACCUuUCGGAUGCgUCUGu--UGu -5'
28836 5' -51.7 NC_006146.1 + 93390 0.67 0.972825
Target:  5'- uUCCUGuGGuuGCCgaaGCAGAUGGCGa -3'
miRNA:   3'- gAGGAC-CUuuCGGaugCGUCUGUUGU- -5'
28836 5' -51.7 NC_006146.1 + 94909 0.74 0.762958
Target:  5'- -gUCUGGGugggcGAGCCcACGCAGACGAUg -3'
miRNA:   3'- gaGGACCU-----UUCGGaUGCGUCUGUUGu -5'
28836 5' -51.7 NC_006146.1 + 101441 0.71 0.890709
Target:  5'- aUCCUGGuuAAGCCgugcaggugGCGCAGAgGugGg -3'
miRNA:   3'- gAGGACCu-UUCGGa--------UGCGUCUgUugU- -5'
28836 5' -51.7 NC_006146.1 + 102935 0.68 0.963414
Target:  5'- aUCgUGGGcuGCCUGCGCAG-CAu-- -3'
miRNA:   3'- gAGgACCUuuCGGAUGCGUCuGUugu -5'
28836 5' -51.7 NC_006146.1 + 103429 0.7 0.904104
Target:  5'- gCUCCUGGAccgGGGCUU-CGCGGAgcACAu -3'
miRNA:   3'- -GAGGACCU---UUCGGAuGCGUCUguUGU- -5'
28836 5' -51.7 NC_006146.1 + 103583 0.68 0.956001
Target:  5'- -gCCUGGGccGGGCUcaGCGCGGACGugGc -3'
miRNA:   3'- gaGGACCU--UUCGGa-UGCGUCUGUugU- -5'
28836 5' -51.7 NC_006146.1 + 103839 0.69 0.947629
Target:  5'- -aCCUGGGAGaagaggguGCUcaaaACGCGGGCGACAg -3'
miRNA:   3'- gaGGACCUUU--------CGGa---UGCGUCUGUUGU- -5'
28836 5' -51.7 NC_006146.1 + 104662 0.69 0.947629
Target:  5'- -aCCgUGGAGAauGCCUGCGCcgcgauagagGGGCAGCu -3'
miRNA:   3'- gaGG-ACCUUU--CGGAUGCG----------UCUGUUGu -5'
28836 5' -51.7 NC_006146.1 + 110268 0.7 0.922326
Target:  5'- aCUCg-GGGGAGCCauCGCAGACGugAu -3'
miRNA:   3'- -GAGgaCCUUUCGGauGCGUCUGUugU- -5'
28836 5' -51.7 NC_006146.1 + 116910 0.66 0.989281
Target:  5'- -cCCUgagGGAAAGCCgggggauCGCAGACcACc -3'
miRNA:   3'- gaGGA---CCUUUCGGau-----GCGUCUGuUGu -5'
28836 5' -51.7 NC_006146.1 + 117187 0.7 0.896858
Target:  5'- gCUCCcGGAGAggacggggaacguGCCcccgcuagGCGCGGACGACAu -3'
miRNA:   3'- -GAGGaCCUUU-------------CGGa-------UGCGUCUGUUGU- -5'
28836 5' -51.7 NC_006146.1 + 117995 0.71 0.868817
Target:  5'- -cCCcGGggGGCC-ACGCAGACcauGCGg -3'
miRNA:   3'- gaGGaCCuuUCGGaUGCGUCUGu--UGU- -5'
28836 5' -51.7 NC_006146.1 + 118047 0.66 0.986195
Target:  5'- -aCCUGGA--GCCcccggGCGgGGGCGGCGg -3'
miRNA:   3'- gaGGACCUuuCGGa----UGCgUCUGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.