miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28836 5' -51.7 NC_006146.1 + 4978 0.69 0.943073
Target:  5'- cCUCCUGGc-GGCCUcacuaACGCGGGguGCc -3'
miRNA:   3'- -GAGGACCuuUCGGA-----UGCGUCUguUGu -5'
28836 5' -51.7 NC_006146.1 + 13219 0.67 0.982471
Target:  5'- aUCCU-GAAGGCCUGCGgcCAGACc--- -3'
miRNA:   3'- gAGGAcCUUUCGGAUGC--GUCUGuugu -5'
28836 5' -51.7 NC_006146.1 + 13511 0.68 0.966772
Target:  5'- -aCCUGGGcuacuuuauGGGCCgagGCGUGGACAGgAa -3'
miRNA:   3'- gaGGACCU---------UUCGGa--UGCGUCUGUUgU- -5'
28836 5' -51.7 NC_006146.1 + 16197 0.67 0.982471
Target:  5'- -cCCUGGugGGCUgcaucuggGCGCAGACcacccAGCAg -3'
miRNA:   3'- gaGGACCuuUCGGa-------UGCGUCUG-----UUGU- -5'
28836 5' -51.7 NC_006146.1 + 17003 0.7 0.924583
Target:  5'- uCUCCUGGAAgcucgaaaacagaacGGCCUACuGCccacuGCAACAc -3'
miRNA:   3'- -GAGGACCUU---------------UCGGAUG-CGuc---UGUUGU- -5'
28836 5' -51.7 NC_006146.1 + 18654 0.69 0.938266
Target:  5'- -gCCaGGGAucgcaugcccGGCCUuCGCAGGCGACGc -3'
miRNA:   3'- gaGGaCCUU----------UCGGAuGCGUCUGUUGU- -5'
28836 5' -51.7 NC_006146.1 + 21389 0.69 0.951937
Target:  5'- aUCCUcaacGAGGCCUAUGCGGACcuCAg -3'
miRNA:   3'- gAGGAcc--UUUCGGAUGCGUCUGuuGU- -5'
28836 5' -51.7 NC_006146.1 + 21626 0.71 0.876348
Target:  5'- -gCCgaGGAcccGGCCUACGCGGAgCGGCAc -3'
miRNA:   3'- gaGGa-CCUu--UCGGAUGCGUCU-GUUGU- -5'
28836 5' -51.7 NC_006146.1 + 40077 0.66 0.986195
Target:  5'- uCUCCcggcGGAGGGCCUgcaGCGCGuGCuGCAg -3'
miRNA:   3'- -GAGGa---CCUUUCGGA---UGCGUcUGuUGU- -5'
28836 5' -51.7 NC_006146.1 + 42083 0.76 0.607832
Target:  5'- gCUCCUGGAccgcGCCguccuuCGCGGACGGCGc -3'
miRNA:   3'- -GAGGACCUuu--CGGau----GCGUCUGUUGU- -5'
28836 5' -51.7 NC_006146.1 + 45042 0.68 0.959825
Target:  5'- uUCgaGGAGGGCCU-CGCGGGCc--- -3'
miRNA:   3'- gAGgaCCUUUCGGAuGCGUCUGuugu -5'
28836 5' -51.7 NC_006146.1 + 46559 0.69 0.951937
Target:  5'- uUCCUGGAGgcgaucaggguGGCgUGCGCcaGCAGCGu -3'
miRNA:   3'- gAGGACCUU-----------UCGgAUGCGucUGUUGU- -5'
28836 5' -51.7 NC_006146.1 + 47321 0.66 0.984418
Target:  5'- cCUCCUGGAugauGGCCUccaGC-CGGGCcaGGCGc -3'
miRNA:   3'- -GAGGACCUu---UCGGA---UGcGUCUG--UUGU- -5'
28836 5' -51.7 NC_006146.1 + 48217 0.7 0.927893
Target:  5'- --aCUGGAGGGCCUggcGCGCcugGGugAGCGc -3'
miRNA:   3'- gagGACCUUUCGGA---UGCG---UCugUUGU- -5'
28836 5' -51.7 NC_006146.1 + 67078 0.67 0.978037
Target:  5'- uCUCCcagguuuggUGGcGGAGCuCUugGCAGACGAg- -3'
miRNA:   3'- -GAGG---------ACC-UUUCG-GAugCGUCUGUUgu -5'
28836 5' -51.7 NC_006146.1 + 68451 1.09 0.007739
Target:  5'- gCUCCUGGAAAGCCUACGCAGACAACAc -3'
miRNA:   3'- -GAGGACCUUUCGGAUGCGUCUGUUGU- -5'
28836 5' -51.7 NC_006146.1 + 69857 0.66 0.986195
Target:  5'- -cCCUGGGAGGUCggGCGUAGAgGc-- -3'
miRNA:   3'- gaGGACCUUUCGGa-UGCGUCUgUugu -5'
28836 5' -51.7 NC_006146.1 + 71246 0.71 0.86106
Target:  5'- aCUCCUGG--GGCCUG-GCGGGgGGCGg -3'
miRNA:   3'- -GAGGACCuuUCGGAUgCGUCUgUUGU- -5'
28836 5' -51.7 NC_006146.1 + 71872 0.73 0.800103
Target:  5'- -cCCUGGggGGCCUcuacacggccgucACGCGGACc--- -3'
miRNA:   3'- gaGGACCuuUCGGA-------------UGCGUCUGuugu -5'
28836 5' -51.7 NC_006146.1 + 71926 0.69 0.943073
Target:  5'- -aCCUGGGccugaccuGGGCCUAUGCcGACGAg- -3'
miRNA:   3'- gaGGACCU--------UUCGGAUGCGuCUGUUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.