miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28836 5' -51.7 NC_006146.1 + 68451 1.09 0.007739
Target:  5'- gCUCCUGGAAAGCCUACGCAGACAACAc -3'
miRNA:   3'- -GAGGACCUUUCGGAUGCGUCUGUUGU- -5'
28836 5' -51.7 NC_006146.1 + 147366 0.77 0.555572
Target:  5'- gCUCCUGGggGGaaCUGgGCAGugGACAc -3'
miRNA:   3'- -GAGGACCuuUCg-GAUgCGUCugUUGU- -5'
28836 5' -51.7 NC_006146.1 + 141210 0.77 0.555572
Target:  5'- gCUCCUGGggGGaaCUGgGCAGugGACAc -3'
miRNA:   3'- -GAGGACCuuUCg-GAUgCGUCugUUGU- -5'
28836 5' -51.7 NC_006146.1 + 144288 0.77 0.555572
Target:  5'- gCUCCUGGggGGaaCUGgGCAGugGACAc -3'
miRNA:   3'- -GAGGACCuuUCg-GAUgCGUCugUUGU- -5'
28836 5' -51.7 NC_006146.1 + 156600 0.77 0.555572
Target:  5'- gCUCCUGGggGGaaCUGgGCAGugGACAc -3'
miRNA:   3'- -GAGGACCuuUCg-GAUgCGUCugUUGU- -5'
28836 5' -51.7 NC_006146.1 + 150444 0.77 0.555572
Target:  5'- gCUCCUGGggGGaaCUGgGCAGugGACAc -3'
miRNA:   3'- -GAGGACCuuUCg-GAUgCGUCugUUGU- -5'
28836 5' -51.7 NC_006146.1 + 153522 0.77 0.555572
Target:  5'- gCUCCUGGggGGaaCUGgGCAGugGACAc -3'
miRNA:   3'- -GAGGACCuuUCg-GAUgCGUCugUUGU- -5'
28836 5' -51.7 NC_006146.1 + 120846 0.77 0.576357
Target:  5'- uUCCUGGAGGGCCUGC-UGGACuGCGc -3'
miRNA:   3'- gAGGACCUUUCGGAUGcGUCUGuUGU- -5'
28836 5' -51.7 NC_006146.1 + 78811 0.76 0.607832
Target:  5'- -cCCUGGGAGGCCcACGCguccAGGCAGCc -3'
miRNA:   3'- gaGGACCUUUCGGaUGCG----UCUGUUGu -5'
28836 5' -51.7 NC_006146.1 + 42083 0.76 0.607832
Target:  5'- gCUCCUGGAccgcGCCguccuuCGCGGACGGCGc -3'
miRNA:   3'- -GAGGACCUuu--CGGau----GCGUCUGUUGU- -5'
28836 5' -51.7 NC_006146.1 + 94909 0.74 0.762958
Target:  5'- -gUCUGGGugggcGAGCCcACGCAGACGAUg -3'
miRNA:   3'- gaGGACCU-----UUCGGaUGCGUCUGUUGu -5'
28836 5' -51.7 NC_006146.1 + 71872 0.73 0.800103
Target:  5'- -cCCUGGggGGCCUcuacacggccgucACGCGGACc--- -3'
miRNA:   3'- gaGGACCuuUCGGA-------------UGCGUCUGuugu -5'
28836 5' -51.7 NC_006146.1 + 156725 0.72 0.836498
Target:  5'- gCUCCgGGGGuccAGCCUgGCGCAGACGc-- -3'
miRNA:   3'- -GAGGaCCUU---UCGGA-UGCGUCUGUugu -5'
28836 5' -51.7 NC_006146.1 + 71246 0.71 0.86106
Target:  5'- aCUCCUGG--GGCCUG-GCGGGgGGCGg -3'
miRNA:   3'- -GAGGACCuuUCGGAUgCGUCUgUUGU- -5'
28836 5' -51.7 NC_006146.1 + 169412 0.71 0.86106
Target:  5'- uCUCCUGGGAGGCC-ACGUguggAGGCccGCGg -3'
miRNA:   3'- -GAGGACCUUUCGGaUGCG----UCUGu-UGU- -5'
28836 5' -51.7 NC_006146.1 + 168480 0.71 0.86106
Target:  5'- uCUCCUGGGAGGCC-ACGUguggAGGCccGCGg -3'
miRNA:   3'- -GAGGACCUUUCGGaUGCG----UCUGu-UGU- -5'
28836 5' -51.7 NC_006146.1 + 167548 0.71 0.86106
Target:  5'- uCUCCUGGGAGGCC-ACGUguggAGGCccGCGg -3'
miRNA:   3'- -GAGGACCUUUCGGaUGCG----UCUGu-UGU- -5'
28836 5' -51.7 NC_006146.1 + 170343 0.71 0.86106
Target:  5'- uCUCCUGGGAGGCC-ACGUguggAGGCccGCGg -3'
miRNA:   3'- -GAGGACCUUUCGGaUGCG----UCUGu-UGU- -5'
28836 5' -51.7 NC_006146.1 + 117995 0.71 0.868817
Target:  5'- -cCCcGGggGGCC-ACGCAGACcauGCGg -3'
miRNA:   3'- gaGGaCCuuUCGGaUGCGUCUGu--UGU- -5'
28836 5' -51.7 NC_006146.1 + 21626 0.71 0.876348
Target:  5'- -gCCgaGGAcccGGCCUACGCGGAgCGGCAc -3'
miRNA:   3'- gaGGa-CCUu--UCGGAUGCGUCU-GUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.