miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28836 5' -51.7 NC_006146.1 + 120846 0.77 0.576357
Target:  5'- uUCCUGGAGGGCCUGC-UGGACuGCGc -3'
miRNA:   3'- gAGGACCUUUCGGAUGcGUCUGuUGU- -5'
28836 5' -51.7 NC_006146.1 + 154609 0.67 0.975532
Target:  5'- --gCUGGAGAGCU--CGCAGACG-CGg -3'
miRNA:   3'- gagGACCUUUCGGauGCGUCUGUuGU- -5'
28836 5' -51.7 NC_006146.1 + 74760 0.67 0.982471
Target:  5'- cCUCC-GGggGGCCaagACGCAGGa---- -3'
miRNA:   3'- -GAGGaCCuuUCGGa--UGCGUCUguugu -5'
28836 5' -51.7 NC_006146.1 + 128561 0.66 0.990606
Target:  5'- aUCCUGGAGcggcaguucgcGGCCU---CGGACGACu -3'
miRNA:   3'- gAGGACCUU-----------UCGGAugcGUCUGUUGu -5'
28836 5' -51.7 NC_006146.1 + 168480 0.71 0.86106
Target:  5'- uCUCCUGGGAGGCC-ACGUguggAGGCccGCGg -3'
miRNA:   3'- -GAGGACCUUUCGGaUGCG----UCUGu-UGU- -5'
28836 5' -51.7 NC_006146.1 + 169412 0.71 0.86106
Target:  5'- uCUCCUGGGAGGCC-ACGUguggAGGCccGCGg -3'
miRNA:   3'- -GAGGACCUUUCGGaUGCG----UCUGu-UGU- -5'
28836 5' -51.7 NC_006146.1 + 110268 0.7 0.922326
Target:  5'- aCUCg-GGGGAGCCauCGCAGACGugAu -3'
miRNA:   3'- -GAGgaCCUUUCGGauGCGUCUGUugU- -5'
28836 5' -51.7 NC_006146.1 + 48217 0.7 0.927893
Target:  5'- --aCUGGAGGGCCUggcGCGCcugGGugAGCGc -3'
miRNA:   3'- gagGACCUUUCGGA---UGCG---UCugUUGU- -5'
28836 5' -51.7 NC_006146.1 + 103839 0.69 0.947629
Target:  5'- -aCCUGGGAGaagaggguGCUcaaaACGCGGGCGACAg -3'
miRNA:   3'- gaGGACCUUU--------CGGa---UGCGUCUGUUGU- -5'
28836 5' -51.7 NC_006146.1 + 93390 0.67 0.972825
Target:  5'- uUCCUGuGGuuGCCgaaGCAGAUGGCGa -3'
miRNA:   3'- gAGGAC-CUuuCGGaugCGUCUGUUGU- -5'
28836 5' -51.7 NC_006146.1 + 46559 0.69 0.951937
Target:  5'- uUCCUGGAGgcgaucaggguGGCgUGCGCcaGCAGCGu -3'
miRNA:   3'- gAGGACCUU-----------UCGgAUGCGucUGUUGU- -5'
28836 5' -51.7 NC_006146.1 + 4978 0.69 0.943073
Target:  5'- cCUCCUGGc-GGCCUcacuaACGCGGGguGCc -3'
miRNA:   3'- -GAGGACCuuUCGGA-----UGCGUCUguUGu -5'
28836 5' -51.7 NC_006146.1 + 94909 0.74 0.762958
Target:  5'- -gUCUGGGugggcGAGCCcACGCAGACGAUg -3'
miRNA:   3'- gaGGACCU-----UUCGGaUGCGUCUGUUGu -5'
28836 5' -51.7 NC_006146.1 + 85934 0.69 0.951937
Target:  5'- -gCCUGGAuGGCCUGCG-GGACuuuGCc -3'
miRNA:   3'- gaGGACCUuUCGGAUGCgUCUGu--UGu -5'
28836 5' -51.7 NC_006146.1 + 156725 0.72 0.836498
Target:  5'- gCUCCgGGGGuccAGCCUgGCGCAGACGc-- -3'
miRNA:   3'- -GAGGaCCUU---UCGGA-UGCGUCUGUugu -5'
28836 5' -51.7 NC_006146.1 + 73995 0.69 0.933206
Target:  5'- aCUCCUGGAAacugaccaccacGGCCUcACGCuGGAgAAUg -3'
miRNA:   3'- -GAGGACCUU------------UCGGA-UGCG-UCUgUUGu -5'
28836 5' -51.7 NC_006146.1 + 129052 0.68 0.969907
Target:  5'- --gCUGGGcccaGAcGCCgGCGCAGACAGCc -3'
miRNA:   3'- gagGACCU----UU-CGGaUGCGUCUGUUGu -5'
28836 5' -51.7 NC_006146.1 + 121408 0.67 0.980347
Target:  5'- gUCCgGGAGAGUCUGCcCAuGAcCAACAu -3'
miRNA:   3'- gAGGaCCUUUCGGAUGcGU-CU-GUUGU- -5'
28836 5' -51.7 NC_006146.1 + 167548 0.71 0.86106
Target:  5'- uCUCCUGGGAGGCC-ACGUguggAGGCccGCGg -3'
miRNA:   3'- -GAGGACCUUUCGGaUGCG----UCUGu-UGU- -5'
28836 5' -51.7 NC_006146.1 + 170343 0.71 0.86106
Target:  5'- uCUCCUGGGAGGCC-ACGUguggAGGCccGCGg -3'
miRNA:   3'- -GAGGACCUUUCGGaUGCG----UCUGu-UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.