miRNA display CGI


Results 61 - 80 of 166 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28837 3' -57.3 NC_006146.1 + 72196 0.67 0.818605
Target:  5'- cGCGg-CGGccGGAUGGGCGGGAgacCAGcGGCc -3'
miRNA:   3'- -UGCagGCU--CCUACCCGUCCU---GUU-CCG- -5'
28837 3' -57.3 NC_006146.1 + 144287 0.67 0.818605
Target:  5'- gGC-UCCuGGGGGgaacUGGGCAguGGACAcgGGGCu -3'
miRNA:   3'- -UGcAGG-CUCCU----ACCCGU--CCUGU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 147365 0.67 0.818605
Target:  5'- gGC-UCCuGGGGGgaacUGGGCAguGGACAcgGGGCu -3'
miRNA:   3'- -UGcAGG-CUCCU----ACCCGU--CCUGU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 99547 0.67 0.818605
Target:  5'- -aGUCCGAGcccccgGGGCAGaGAuCGGGGUc -3'
miRNA:   3'- ugCAGGCUCcua---CCCGUC-CU-GUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 150443 0.67 0.818605
Target:  5'- gGC-UCCuGGGGGgaacUGGGCAguGGACAcgGGGCu -3'
miRNA:   3'- -UGcAGG-CUCCU----ACCCGU--CCUGU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 153521 0.67 0.818605
Target:  5'- gGC-UCCuGGGGGgaacUGGGCAguGGACAcgGGGCu -3'
miRNA:   3'- -UGcAGG-CUCCU----ACCCGU--CCUGU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 156599 0.67 0.818605
Target:  5'- gGC-UCCuGGGGGgaacUGGGCAguGGACAcgGGGCu -3'
miRNA:   3'- -UGcAGG-CUCCU----ACCCGU--CCUGU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 141209 0.67 0.818605
Target:  5'- gGC-UCCuGGGGGgaacUGGGCAguGGACAcgGGGCu -3'
miRNA:   3'- -UGcAGG-CUCCU----ACCCGU--CCUGU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 155684 0.67 0.817758
Target:  5'- --uUCUGAGGAUggcccgguacugcGGGUucgAGGugAAGGCg -3'
miRNA:   3'- ugcAGGCUCCUA-------------CCCG---UCCugUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 135961 0.68 0.810064
Target:  5'- cACGUcaccCCGGGGugcUGGGguGGGgGauGGGCu -3'
miRNA:   3'- -UGCA----GGCUCCu--ACCCguCCUgU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 32131 0.68 0.810064
Target:  5'- cACGUcaccCCGGGGugcUGGGguGGGgGauGGGCu -3'
miRNA:   3'- -UGCA----GGCUCCu--ACCCguCCUgU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 122219 0.68 0.798729
Target:  5'- gGCGggCGAGGGaggccggcgaagcaUGGGcCAGGAUucagAAGGCg -3'
miRNA:   3'- -UGCagGCUCCU--------------ACCC-GUCCUG----UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 33994 0.68 0.796078
Target:  5'- -gGUCCGgugcaccuggaaggcAGGGgggGGGuCGGGGCAggcGGGCg -3'
miRNA:   3'- ugCAGGC---------------UCCUa--CCC-GUCCUGU---UCCG- -5'
28837 3' -57.3 NC_006146.1 + 125619 0.68 0.783539
Target:  5'- ---aCCGAGGGUgGGGCAuGGGCu-GGUg -3'
miRNA:   3'- ugcaGGCUCCUA-CCCGU-CCUGuuCCG- -5'
28837 3' -57.3 NC_006146.1 + 142325 0.68 0.783539
Target:  5'- gGCGcCCggagcGAGGccGGGCAGG-CcGGGCa -3'
miRNA:   3'- -UGCaGG-----CUCCuaCCCGUCCuGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 145403 0.68 0.783539
Target:  5'- gGCGcCCggagcGAGGccGGGCAGG-CcGGGCa -3'
miRNA:   3'- -UGCaGG-----CUCCuaCCCGUCCuGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 148481 0.68 0.783539
Target:  5'- gGCGcCCggagcGAGGccGGGCAGG-CcGGGCa -3'
miRNA:   3'- -UGCaGG-----CUCCuaCCCGUCCuGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 154637 0.68 0.783539
Target:  5'- gGCGcCCggagcGAGGccGGGCAGG-CcGGGCa -3'
miRNA:   3'- -UGCaGG-----CUCCuaCCCGUCCuGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 151559 0.68 0.783539
Target:  5'- gGCGcCCggagcGAGGccGGGCAGG-CcGGGCa -3'
miRNA:   3'- -UGCaGG-----CUCCuaCCCGUCCuGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 157714 0.68 0.783539
Target:  5'- gGCGcCCggagcGAGGccGGGCAGG-CcGGGCa -3'
miRNA:   3'- -UGCaGG-----CUCCuaCCCGUCCuGuUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.