miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28837 3' -57.3 NC_006146.1 + 157113 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 40292 0.67 0.858714
Target:  5'- gGCGggCCaaaGAGGccGGGCAGGcCAaaguAGGCc -3'
miRNA:   3'- -UGCa-GG---CUCCuaCCCGUCCuGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 154035 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 150957 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 147879 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 144801 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 141723 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 127952 0.67 0.851062
Target:  5'- aGCGUgcCCGGGGcggaGGGCAgGGACcGGGa -3'
miRNA:   3'- -UGCA--GGCUCCua--CCCGU-CCUGuUCCg -5'
28837 3' -57.3 NC_006146.1 + 77830 0.67 0.851061
Target:  5'- gACGgCgGAGGGggGGGCGGGG--GGGUg -3'
miRNA:   3'- -UGCaGgCUCCUa-CCCGUCCUguUCCG- -5'
28837 3' -57.3 NC_006146.1 + 138810 0.67 0.849508
Target:  5'- -gGcCCGGGGuuggugagcuauUGGGCGcccGGACAGGGUu -3'
miRNA:   3'- ugCaGGCUCCu-----------ACCCGU---CCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 64236 0.67 0.835189
Target:  5'- uGCGcCUGGGccgGGGCGGGA-GGGGCg -3'
miRNA:   3'- -UGCaGGCUCcuaCCCGUCCUgUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 43616 0.67 0.835189
Target:  5'- -gGUCgGGGGAagagggagUGGGCggcGGGGCGuGGCc -3'
miRNA:   3'- ugCAGgCUCCU--------ACCCG---UCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 41024 0.67 0.826983
Target:  5'- gGCGUCagagccguggGAGGA-GGGCcuAGGACAgcuuccgaGGGCu -3'
miRNA:   3'- -UGCAGg---------CUCCUaCCCG--UCCUGU--------UCCG- -5'
28837 3' -57.3 NC_006146.1 + 169990 0.67 0.826983
Target:  5'- cGCGcCCGGGGucccgggGGGCGGcGCGcGGCc -3'
miRNA:   3'- -UGCaGGCUCCua-----CCCGUCcUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 169058 0.67 0.826983
Target:  5'- cGCGcCCGGGGucccgggGGGCGGcGCGcGGCc -3'
miRNA:   3'- -UGCaGGCUCCua-----CCCGUCcUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 167194 0.67 0.826983
Target:  5'- cGCGcCCGGGGucccgggGGGCGGcGCGcGGCc -3'
miRNA:   3'- -UGCaGGCUCCua-----CCCGUCcUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 68721 0.67 0.826983
Target:  5'- cGCGUCCccGAGaGcugucgcGGGguGGugGAGGCc -3'
miRNA:   3'- -UGCAGG--CUC-Cua-----CCCguCCugUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 168126 0.67 0.826983
Target:  5'- cGCGcCCGGGGucccgggGGGCGGcGCGcGGCc -3'
miRNA:   3'- -UGCaGGCUCCua-----CCCGUCcUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 54693 0.67 0.826983
Target:  5'- gGCGUaaaugagcUCGAGGGgacggcGGGCccGGGuCAGGGCg -3'
miRNA:   3'- -UGCA--------GGCUCCUa-----CCCG--UCCuGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 139130 0.67 0.826982
Target:  5'- gGC-UCCGA---UGGcGCAGGugGGGGCa -3'
miRNA:   3'- -UGcAGGCUccuACC-CGUCCugUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.