miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28837 3' -57.3 NC_006146.1 + 146241 0.66 0.880463
Target:  5'- cGCGgagggcCUGAGGcccagGGGCgagGGGACuGAGGCg -3'
miRNA:   3'- -UGCa-----GGCUCCua---CCCG---UCCUG-UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 149319 0.66 0.880463
Target:  5'- cGCGgagggcCUGAGGcccagGGGCgagGGGACuGAGGCg -3'
miRNA:   3'- -UGCa-----GGCUCCua---CCCG---UCCUG-UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 155475 0.66 0.880463
Target:  5'- cGCGgagggcCUGAGGcccagGGGCgagGGGACuGAGGCg -3'
miRNA:   3'- -UGCa-----GGCUCCua---CCCG---UCCUG-UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 158554 0.66 0.880463
Target:  5'- cGCGgagggcCUGAGGcccagGGGCgagGGGACuGAGGCg -3'
miRNA:   3'- -UGCa-----GGCUCCua---CCCG---UCCUG-UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 152397 0.66 0.880463
Target:  5'- cGCGgagggcCUGAGGcccagGGGCgagGGGACuGAGGCg -3'
miRNA:   3'- -UGCa-----GGCUCCua---CCCG---UCCUG-UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 76582 0.66 0.87342
Target:  5'- -gGUCCccguGGGGAccGaGCAGGACGAGGa -3'
miRNA:   3'- ugCAGG----CUCCUacC-CGUCCUGUUCCg -5'
28837 3' -57.3 NC_006146.1 + 50803 0.66 0.87342
Target:  5'- gGCGUCCGuacGGucccaGGGgGGGAUccuugGGGGCu -3'
miRNA:   3'- -UGCAGGCu--CCua---CCCgUCCUG-----UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 48318 0.66 0.87342
Target:  5'- cCGUCgGAGGugcUGGcGguGGugGgccAGGCg -3'
miRNA:   3'- uGCAGgCUCCu--ACC-CguCCugU---UCCG- -5'
28837 3' -57.3 NC_006146.1 + 116045 0.66 0.87342
Target:  5'- cACGgcccgcugCUGGGGAUGGcGCAuGACAAauguGGCg -3'
miRNA:   3'- -UGCa-------GGCUCCUACC-CGUcCUGUU----CCG- -5'
28837 3' -57.3 NC_006146.1 + 99993 0.66 0.872704
Target:  5'- cGCGUCCucGGGAUcGGGagcGGGCAcgucgggAGGCg -3'
miRNA:   3'- -UGCAGGc-UCCUA-CCCgu-CCUGU-------UCCG- -5'
28837 3' -57.3 NC_006146.1 + 139409 0.66 0.872704
Target:  5'- gGCG-CCGGGGGaGGugccugcuguuuaGUAGGAgAAGGCc -3'
miRNA:   3'- -UGCaGGCUCCUaCC-------------CGUCCUgUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 98233 0.66 0.869094
Target:  5'- gGCGUagCCGGGGugcaGGGC-GGACAgcacguccaacagaaAGGCc -3'
miRNA:   3'- -UGCA--GGCUCCua--CCCGuCCUGU---------------UCCG- -5'
28837 3' -57.3 NC_006146.1 + 118392 0.66 0.866169
Target:  5'- -gGUCUGcAGGAuaaacaUGGGCGGaGCAuGGCg -3'
miRNA:   3'- ugCAGGC-UCCU------ACCCGUCcUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 116752 0.66 0.866168
Target:  5'- ----aCGAGGAggaGGGCAGGG--GGGCc -3'
miRNA:   3'- ugcagGCUCCUa--CCCGUCCUguUCCG- -5'
28837 3' -57.3 NC_006146.1 + 162394 0.66 0.865432
Target:  5'- cGCGcCCGGGaccccGGUGGGCcAGGAUgguggggAAGGUa -3'
miRNA:   3'- -UGCaGGCUC-----CUACCCG-UCCUG-------UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 117807 0.66 0.865432
Target:  5'- cGCcUCCGGacuagacGGA-GGGgAGGAgGAGGCg -3'
miRNA:   3'- -UGcAGGCU-------CCUaCCCgUCCUgUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 120506 0.67 0.86172
Target:  5'- gGCGgCCGAGGAcgcgagccgcguggaUGcggcGGCGGGACugcuGGCc -3'
miRNA:   3'- -UGCaGGCUCCU---------------AC----CCGUCCUGuu--CCG- -5'
28837 3' -57.3 NC_006146.1 + 150957 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 157113 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 154035 0.67 0.858714
Target:  5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3'
miRNA:   3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.