Results 21 - 40 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 150712 | 0.66 | 0.887293 |
Target: 5'- gGCcUgCGGGGGacaGGguGGACGGGGCu -3' miRNA: 3'- -UGcAgGCUCCUac-CCguCCUGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 147635 | 0.66 | 0.887293 |
Target: 5'- gGCcUgCGGGGGacaGGguGGACGGGGCu -3' miRNA: 3'- -UGcAgGCUCCUac-CCguCCUGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 144557 | 0.66 | 0.887293 |
Target: 5'- gGCcUgCGGGGGacaGGguGGACGGGGCu -3' miRNA: 3'- -UGcAgGCUCCUac-CCguCCUGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 141479 | 0.66 | 0.887293 |
Target: 5'- gGCcUgCGGGGGacaGGguGGACGGGGCu -3' miRNA: 3'- -UGcAgGCUCCUac-CCguCCUGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 156823 | 0.66 | 0.887293 |
Target: 5'- gUGgCCGGGGAgGGGUGGGGaguGGCc -3' miRNA: 3'- uGCaGGCUCCUaCCCGUCCUguuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 116819 | 0.66 | 0.893906 |
Target: 5'- gGCGUCC-AGGAcgUGuGcCGGGACGcGGCg -3' miRNA: 3'- -UGCAGGcUCCU--ACcC-GUCCUGUuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 153745 | 0.66 | 0.887293 |
Target: 5'- gUGgCCGGGGAgGGGUGGGGaguGGCc -3' miRNA: 3'- uGCaGGCUCCUaCCCGUCCUguuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 150668 | 0.66 | 0.887293 |
Target: 5'- gUGgCCGGGGAgGGGUGGGGaguGGCc -3' miRNA: 3'- uGCaGGCUCCUaCCCGUCCUguuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 152397 | 0.66 | 0.880463 |
Target: 5'- cGCGgagggcCUGAGGcccagGGGCgagGGGACuGAGGCg -3' miRNA: 3'- -UGCa-----GGCUCCua---CCCG---UCCUG-UUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 155475 | 0.66 | 0.880463 |
Target: 5'- cGCGgagggcCUGAGGcccagGGGCgagGGGACuGAGGCg -3' miRNA: 3'- -UGCa-----GGCUCCua---CCCG---UCCUG-UUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 158554 | 0.66 | 0.880463 |
Target: 5'- cGCGgagggcCUGAGGcccagGGGCgagGGGACuGAGGCg -3' miRNA: 3'- -UGCa-----GGCUCCua---CCCG---UCCUG-UUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 89016 | 0.66 | 0.887293 |
Target: 5'- cACGgagccugCCGuGGAuguUGGGUcugAGGcCGAGGCu -3' miRNA: 3'- -UGCa------GGCuCCU---ACCCG---UCCuGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 141434 | 0.66 | 0.887293 |
Target: 5'- gUGgCCGGGGAgGGGUGGGGaguGGCc -3' miRNA: 3'- uGCaGGCUCCUaCCCGUCCUguuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 144512 | 0.66 | 0.887293 |
Target: 5'- gUGgCCGGGGAgGGGUGGGGaguGGCc -3' miRNA: 3'- uGCaGGCUCCUaCCCGUCCUguuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 147590 | 0.66 | 0.887293 |
Target: 5'- gUGgCCGGGGAgGGGUGGGGaguGGCc -3' miRNA: 3'- uGCaGGCUCCUaCCCGUCCUguuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 153790 | 0.66 | 0.887293 |
Target: 5'- gGCcUgCGGGGGacaGGguGGACGGGGCu -3' miRNA: 3'- -UGcAgGCUCCUac-CCguCCUGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 139130 | 0.67 | 0.826982 |
Target: 5'- gGC-UCCGA---UGGcGCAGGugGGGGCa -3' miRNA: 3'- -UGcAGGCUccuACC-CGUCCugUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 154035 | 0.67 | 0.858714 |
Target: 5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3' miRNA: 3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 157113 | 0.67 | 0.858714 |
Target: 5'- -gGgggCCGGGGAgggaggcGGGgAGGACA-GGCc -3' miRNA: 3'- ugCa--GGCUCCUa------CCCgUCCUGUuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 40292 | 0.67 | 0.858714 |
Target: 5'- gGCGggCCaaaGAGGccGGGCAGGcCAaaguAGGCc -3' miRNA: 3'- -UGCa-GG---CUCCuaCCCGUCCuGU----UCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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