miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28837 3' -57.3 NC_006146.1 + 36232 0.69 0.755834
Target:  5'- cCGgCCGGGGAgGaGGCAGGGC--GGCu -3'
miRNA:   3'- uGCaGGCUCCUaC-CCGUCCUGuuCCG- -5'
28837 3' -57.3 NC_006146.1 + 40292 0.67 0.858714
Target:  5'- gGCGggCCaaaGAGGccGGGCAGGcCAaaguAGGCc -3'
miRNA:   3'- -UGCa-GG---CUCCuaCCCGUCCuGU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 41024 0.67 0.826983
Target:  5'- gGCGUCagagccguggGAGGA-GGGCcuAGGACAgcuuccgaGGGCu -3'
miRNA:   3'- -UGCAGg---------CUCCUaCCCG--UCCUGU--------UCCG- -5'
28837 3' -57.3 NC_006146.1 + 42259 0.73 0.480178
Target:  5'- cCGUCCccgaaugcgggagGAGGAUGGGUGGuGGCGGGGa -3'
miRNA:   3'- uGCAGG-------------CUCCUACCCGUC-CUGUUCCg -5'
28837 3' -57.3 NC_006146.1 + 42371 0.72 0.548119
Target:  5'- cGCG-CCGccAGGGUGGGCgaGGGGCGccccaGGGCc -3'
miRNA:   3'- -UGCaGGC--UCCUACCCG--UCCUGU-----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 43581 0.76 0.376659
Target:  5'- aGCGUucCCGGGGAgcgGGGCGGGAgGccGGGUc -3'
miRNA:   3'- -UGCA--GGCUCCUa--CCCGUCCUgU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 43616 0.67 0.835189
Target:  5'- -gGUCgGGGGAagagggagUGGGCggcGGGGCGuGGCc -3'
miRNA:   3'- ugCAGgCUCCU--------ACCCG---UCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 44126 0.71 0.627828
Target:  5'- cCGg-CGAGGAggggGGGCAGGACGuGcGCa -3'
miRNA:   3'- uGCagGCUCCUa---CCCGUCCUGUuC-CG- -5'
28837 3' -57.3 NC_006146.1 + 44383 0.72 0.577764
Target:  5'- cCGcCCGGGGGgcgugugGGGCcGGGCAcGGCg -3'
miRNA:   3'- uGCaGGCUCCUa------CCCGuCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 44512 0.73 0.524753
Target:  5'- gGCGUCCGGGGuuucaggcugacGGGCggAGGACGgugggGGGCu -3'
miRNA:   3'- -UGCAGGCUCCua----------CCCG--UCCUGU-----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 48318 0.66 0.87342
Target:  5'- cCGUCgGAGGugcUGGcGguGGugGgccAGGCg -3'
miRNA:   3'- uGCAGgCUCCu--ACC-CguCCugU---UCCG- -5'
28837 3' -57.3 NC_006146.1 + 49788 0.7 0.697818
Target:  5'- gUGUCUcAGGAgGGGCAGGAagauGGGUg -3'
miRNA:   3'- uGCAGGcUCCUaCCCGUCCUgu--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 50803 0.66 0.87342
Target:  5'- gGCGUCCGuacGGucccaGGGgGGGAUccuugGGGGCu -3'
miRNA:   3'- -UGCAGGCu--CCua---CCCgUCCUG-----UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 51444 0.7 0.697819
Target:  5'- -gGUgUGGaGAUGGGCGGGACuaGAGGUg -3'
miRNA:   3'- ugCAgGCUcCUACCCGUCCUG--UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 51867 0.72 0.534445
Target:  5'- -aGcCCGGGGAUGGGgaugaagaggggaGGGugGAGGCu -3'
miRNA:   3'- ugCaGGCUCCUACCCg------------UCCugUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 52501 0.72 0.576769
Target:  5'- gACGgCCGAguuGGAgaucUGGGCgggaaagAGGACGAGGCc -3'
miRNA:   3'- -UGCaGGCU---CCU----ACCCG-------UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 52975 0.69 0.736824
Target:  5'- --cUCCGcgGGGcgGGGCGGGcgucuCGAGGCc -3'
miRNA:   3'- ugcAGGC--UCCuaCCCGUCCu----GUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 54693 0.67 0.826983
Target:  5'- gGCGUaaaugagcUCGAGGGgacggcGGGCccGGGuCAGGGCg -3'
miRNA:   3'- -UGCA--------GGCUCCUa-----CCCG--UCCuGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 55017 0.72 0.53834
Target:  5'- gGCGggaUGGGGgcGGGCGGGAUggGGg -3'
miRNA:   3'- -UGCag-GCUCCuaCCCGUCCUGuuCCg -5'
28837 3' -57.3 NC_006146.1 + 56241 0.7 0.657961
Target:  5'- -gGUCCGcGG--GGGCGGaGGCGGGGCc -3'
miRNA:   3'- ugCAGGCuCCuaCCCGUC-CUGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.