miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28837 3' -57.3 NC_006146.1 + 3778 0.69 0.755834
Target:  5'- uACG-CgGGGGGgggGGGgGGGGgGGGGCa -3'
miRNA:   3'- -UGCaGgCUCCUa--CCCgUCCUgUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 4665 0.74 0.453613
Target:  5'- cCGUCCuGGGccGGGU-GGGCGAGGCg -3'
miRNA:   3'- uGCAGGcUCCuaCCCGuCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 11742 0.7 0.687912
Target:  5'- gUGUCCaaGAcGAccgGGGCAGGGCAAGGa -3'
miRNA:   3'- uGCAGG--CUcCUa--CCCGUCCUGUUCCg -5'
28837 3' -57.3 NC_006146.1 + 12838 0.73 0.518969
Target:  5'- gGCGgccggacCCGAGGA-GGcGCcuGGGGCGAGGCu -3'
miRNA:   3'- -UGCa------GGCUCCUaCC-CG--UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 15217 0.71 0.594722
Target:  5'- cGCGUCCGcAGGA-GGGUcuuccuugaagaagAGGAC-GGGCc -3'
miRNA:   3'- -UGCAGGC-UCCUaCCCG--------------UCCUGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 15917 0.71 0.617781
Target:  5'- gGCGgccggacCCGAGGA-GGcGCcuGGGCGAGGCu -3'
miRNA:   3'- -UGCa------GGCUCCUaCC-CGu-CCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 18295 0.71 0.594722
Target:  5'- cGCGUCCGcAGGA-GGGUcuuccuugaagaagAGGAC-GGGCc -3'
miRNA:   3'- -UGCAGGC-UCCUaCCCG--------------UCCUGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 18994 0.71 0.617781
Target:  5'- gGCGgccggacCCGAGGA-GGcGCcuGGGCGAGGCu -3'
miRNA:   3'- -UGCa------GGCUCCUaCC-CGu-CCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 21373 0.71 0.594722
Target:  5'- cGCGUCCGcAGGA-GGGUcuuccuugaagaagAGGAC-GGGCc -3'
miRNA:   3'- -UGCAGGC-UCCUaCCCG--------------UCCUGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 21907 0.74 0.453613
Target:  5'- cCG-CCGAGGAggagGGGCGGGGaagcuggcaGAGGCc -3'
miRNA:   3'- uGCaGGCUCCUa---CCCGUCCUg--------UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 22072 0.71 0.617781
Target:  5'- gGCGgccggacCCGAGGA-GGcGCcuGGGCGAGGCu -3'
miRNA:   3'- -UGCa------GGCUCCUaCC-CGu-CCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 24451 0.71 0.594722
Target:  5'- cGCGUCCGcAGGA-GGGUcuuccuugaagaagAGGAC-GGGCc -3'
miRNA:   3'- -UGCAGGC-UCCUaCCCG--------------UCCUGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 25150 0.71 0.617781
Target:  5'- gGCGgccggacCCGAGGA-GGcGCcuGGGCGAGGCu -3'
miRNA:   3'- -UGCa------GGCUCCUaCC-CGu-CCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 27529 0.71 0.594722
Target:  5'- cGCGUCCGcAGGA-GGGUcuuccuugaagaagAGGAC-GGGCc -3'
miRNA:   3'- -UGCAGGC-UCCUaCCCG--------------UCCUGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 28030 0.71 0.646922
Target:  5'- cCGUCCGAcccagccGGA-GGGCAGGugGcuGCa -3'
miRNA:   3'- uGCAGGCU-------CCUaCCCGUCCugUucCG- -5'
28837 3' -57.3 NC_006146.1 + 28222 0.71 0.646922
Target:  5'- cCGUCCGAcccagccGGA-GGGCAGGugGcuGCg -3'
miRNA:   3'- uGCAGGCU-------CCUaCCCGUCCugUucCG- -5'
28837 3' -57.3 NC_006146.1 + 28228 0.71 0.617781
Target:  5'- gGCGgccggacCCGAGGA-GGcGCcuGGGCGAGGCu -3'
miRNA:   3'- -UGCa------GGCUCCUaCC-CGu-CCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 32006 0.71 0.597723
Target:  5'- cACG-CUagGAGGAcagagGGGCcucGGGACGAGGCg -3'
miRNA:   3'- -UGCaGG--CUCCUa----CCCG---UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 32131 0.68 0.810064
Target:  5'- cACGUcaccCCGGGGugcUGGGguGGGgGauGGGCu -3'
miRNA:   3'- -UGCA----GGCUCCu--ACCCguCCUgU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 33994 0.68 0.796078
Target:  5'- -gGUCCGgugcaccuggaaggcAGGGgggGGGuCGGGGCAggcGGGCg -3'
miRNA:   3'- ugCAGGC---------------UCCUa--CCC-GUCCUGU---UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.