Results 1 - 20 of 166 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 139963 | 0.75 | 0.409772 |
Target: 5'- cCGUCUGgcucaugggcAGGuGUGGGCAGGugGGGGUg -3' miRNA: 3'- uGCAGGC----------UCC-UACCCGUCCugUUCCG- -5' |
|||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 21373 | 0.71 | 0.594722 |
Target: 5'- cGCGUCCGcAGGA-GGGUcuuccuugaagaagAGGAC-GGGCc -3' miRNA: 3'- -UGCAGGC-UCCUaCCCG--------------UCCUGuUCCG- -5' |
|||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 27529 | 0.71 | 0.594722 |
Target: 5'- cGCGUCCGcAGGA-GGGUcuuccuugaagaagAGGAC-GGGCc -3' miRNA: 3'- -UGCAGGC-UCCUaCCCG--------------UCCUGuUCCG- -5' |
|||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 94902 | 0.66 | 0.891946 |
Target: 5'- gGCGUCUGucuGGGUGGGCGaGcccacgcagacgauGCAGGGg -3' miRNA: 3'- -UGCAGGCu--CCUACCCGUcC--------------UGUUCCg -5' |
|||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 12838 | 0.73 | 0.518969 |
Target: 5'- gGCGgccggacCCGAGGA-GGcGCcuGGGGCGAGGCu -3' miRNA: 3'- -UGCa------GGCUCCUaCC-CG--UCCUGUUCCG- -5' |
|||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 44512 | 0.73 | 0.524753 |
Target: 5'- gGCGUCCGGGGuuucaggcugacGGGCggAGGACGgugggGGGCu -3' miRNA: 3'- -UGCAGGCUCCua----------CCCG--UCCUGU-----UCCG- -5' |
|||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 55017 | 0.72 | 0.53834 |
Target: 5'- gGCGggaUGGGGgcGGGCGGGAUggGGg -3' miRNA: 3'- -UGCag-GCUCCuaCCCGUCCUGuuCCg -5' |
|||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 52501 | 0.72 | 0.576769 |
Target: 5'- gACGgCCGAguuGGAgaucUGGGCgggaaagAGGACGAGGCc -3' miRNA: 3'- -UGCaGGCU---CCU----ACCCG-------UCCUGUUCCG- -5' |
|||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 169233 | 0.72 | 0.577764 |
Target: 5'- gGCGccggCCGGGGGcugaggGGGCucccgAGGGCGGGGCc -3' miRNA: 3'- -UGCa---GGCUCCUa-----CCCG-----UCCUGUUCCG- -5' |
|||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 18295 | 0.71 | 0.594722 |
Target: 5'- cGCGUCCGcAGGA-GGGUcuuccuugaagaagAGGAC-GGGCc -3' miRNA: 3'- -UGCAGGC-UCCUaCCCG--------------UCCUGuUCCG- -5' |
|||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 44383 | 0.72 | 0.577764 |
Target: 5'- cCGcCCGGGGGgcgugugGGGCcGGGCAcGGCg -3' miRNA: 3'- uGCaGGCUCCUa------CCCGuCCUGUuCCG- -5' |
|||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 168301 | 0.72 | 0.577764 |
Target: 5'- gGCGccggCCGGGGGcugaggGGGCucccgAGGGCGGGGCc -3' miRNA: 3'- -UGCa---GGCUCCUa-----CCCG-----UCCUGUUCCG- -5' |
|||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 4665 | 0.74 | 0.453613 |
Target: 5'- cCGUCCuGGGccGGGU-GGGCGAGGCg -3' miRNA: 3'- uGCAGGcUCCuaCCCGuCCUGUUCCG- -5' |
|||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 170106 | 0.72 | 0.587728 |
Target: 5'- gGCG-CCGcAGGggGGGCcGG-CGGGGCg -3' miRNA: 3'- -UGCaGGC-UCCuaCCCGuCCuGUUCCG- -5' |
|||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 89768 | 0.74 | 0.45723 |
Target: 5'- gGCGgaaaUCGAGGAcgagGGGCccauggccguggacgAGGACGAGGCa -3' miRNA: 3'- -UGCa---GGCUCCUa---CCCG---------------UCCUGUUCCG- -5' |
|||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 167369 | 0.72 | 0.577764 |
Target: 5'- gGCGccggCCGGGGGcugaggGGGCucccgAGGGCGGGGCc -3' miRNA: 3'- -UGCa---GGCUCCUa-----CCCG-----UCCUGUUCCG- -5' |
|||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 15217 | 0.71 | 0.594722 |
Target: 5'- cGCGUCCGcAGGA-GGGUcuuccuugaagaagAGGAC-GGGCc -3' miRNA: 3'- -UGCAGGC-UCCUaCCCG--------------UCCUGuUCCG- -5' |
|||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 24451 | 0.71 | 0.594722 |
Target: 5'- cGCGUCCGcAGGA-GGGUcuuccuugaagaagAGGAC-GGGCc -3' miRNA: 3'- -UGCAGGC-UCCUaCCCG--------------UCCUGuUCCG- -5' |
|||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 42259 | 0.73 | 0.480178 |
Target: 5'- cCGUCCccgaaugcgggagGAGGAUGGGUGGuGGCGGGGa -3' miRNA: 3'- uGCAGG-------------CUCCUACCCGUC-CUGUUCCg -5' |
|||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 51867 | 0.72 | 0.534445 |
Target: 5'- -aGcCCGGGGAUGGGgaugaagaggggaGGGugGAGGCu -3' miRNA: 3'- ugCaGGCUCCUACCCg------------UCCugUUCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home