miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28837 3' -57.3 NC_006146.1 + 66230 1.11 0.001946
Target:  5'- cACGUCCGAGGAUGGGCAGGACAAGGCu -3'
miRNA:   3'- -UGCAGGCUCCUACCCGUCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 43581 0.76 0.376659
Target:  5'- aGCGUucCCGGGGAgcgGGGCGGGAgGccGGGUc -3'
miRNA:   3'- -UGCA--GGCUCCUa--CCCGUCCUgU--UCCG- -5'
28837 3' -57.3 NC_006146.1 + 69609 0.75 0.384766
Target:  5'- cACGUaCCaGAaGAUGGGCAGGAUGAGGa -3'
miRNA:   3'- -UGCA-GG-CUcCUACCCGUCCUGUUCCg -5'
28837 3' -57.3 NC_006146.1 + 139963 0.75 0.409772
Target:  5'- cCGUCUGgcucaugggcAGGuGUGGGCAGGugGGGGUg -3'
miRNA:   3'- uGCAGGC----------UCC-UACCCGUCCugUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 21907 0.74 0.453613
Target:  5'- cCG-CCGAGGAggagGGGCGGGGaagcuggcaGAGGCc -3'
miRNA:   3'- uGCaGGCUCCUa---CCCGUCCUg--------UUCCG- -5'
28837 3' -57.3 NC_006146.1 + 4665 0.74 0.453613
Target:  5'- cCGUCCuGGGccGGGU-GGGCGAGGCg -3'
miRNA:   3'- uGCAGGcUCCuaCCCGuCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 89768 0.74 0.45723
Target:  5'- gGCGgaaaUCGAGGAcgagGGGCccauggccguggacgAGGACGAGGCa -3'
miRNA:   3'- -UGCa---GGCUCCUa---CCCG---------------UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 103556 0.74 0.460862
Target:  5'- cCGgaccCCGAGGAUGGGCucgcccgggccuGGGCcGGGCu -3'
miRNA:   3'- uGCa---GGCUCCUACCCGu-----------CCUGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 42259 0.73 0.480178
Target:  5'- cCGUCCccgaaugcgggagGAGGAUGGGUGGuGGCGGGGa -3'
miRNA:   3'- uGCAGG-------------CUCCUACCCGUC-CUGUUCCg -5'
28837 3' -57.3 NC_006146.1 + 128664 0.73 0.518969
Target:  5'- gACGg-CGGGGAcGGGCAGGAgAcaacGGGCg -3'
miRNA:   3'- -UGCagGCUCCUaCCCGUCCUgU----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 103099 0.73 0.518969
Target:  5'- uACuUCCGAGGcgGGGCAGaGCcuGGCc -3'
miRNA:   3'- -UGcAGGCUCCuaCCCGUCcUGuuCCG- -5'
28837 3' -57.3 NC_006146.1 + 12838 0.73 0.518969
Target:  5'- gGCGgccggacCCGAGGA-GGcGCcuGGGGCGAGGCu -3'
miRNA:   3'- -UGCa------GGCUCCUaCC-CG--UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 44512 0.73 0.524753
Target:  5'- gGCGUCCGGGGuuucaggcugacGGGCggAGGACGgugggGGGCu -3'
miRNA:   3'- -UGCAGGCUCCua----------CCCG--UCCUGU-----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 51867 0.72 0.534445
Target:  5'- -aGcCCGGGGAUGGGgaugaagaggggaGGGugGAGGCu -3'
miRNA:   3'- ugCaGGCUCCUACCCg------------UCCugUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 55017 0.72 0.53834
Target:  5'- gGCGggaUGGGGgcGGGCGGGAUggGGg -3'
miRNA:   3'- -UGCag-GCUCCuaCCCGUCCUGuuCCg -5'
28837 3' -57.3 NC_006146.1 + 42371 0.72 0.548119
Target:  5'- cGCG-CCGccAGGGUGGGCgaGGGGCGccccaGGGCc -3'
miRNA:   3'- -UGCaGGC--UCCUACCCG--UCCUGU-----UCCG- -5'
28837 3' -57.3 NC_006146.1 + 52501 0.72 0.576769
Target:  5'- gACGgCCGAguuGGAgaucUGGGCgggaaagAGGACGAGGCc -3'
miRNA:   3'- -UGCaGGCU---CCU----ACCCG-------UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 146717 0.72 0.577763
Target:  5'- gACGgUgGAGGuggccccgGGcGCAGGGCAAGGCg -3'
miRNA:   3'- -UGCaGgCUCCua------CC-CGUCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 152873 0.72 0.577763
Target:  5'- gACGgUgGAGGuggccccgGGcGCAGGGCAAGGCg -3'
miRNA:   3'- -UGCaGgCUCCua------CC-CGUCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 149795 0.72 0.577763
Target:  5'- gACGgUgGAGGuggccccgGGcGCAGGGCAAGGCg -3'
miRNA:   3'- -UGCaGgCUCCua------CC-CGUCCUGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.