miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28837 3' -57.3 NC_006146.1 + 155951 0.72 0.577763
Target:  5'- gACGgUgGAGGuggccccgGGcGCAGGGCAAGGCg -3'
miRNA:   3'- -UGCaGgCUCCua------CC-CGUCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 146717 0.72 0.577763
Target:  5'- gACGgUgGAGGuggccccgGGcGCAGGGCAAGGCg -3'
miRNA:   3'- -UGCaGgCUCCua------CC-CGUCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 170164 0.72 0.577764
Target:  5'- gGCGccggCCGGGGGcugaggGGGCucccgAGGGCGGGGCc -3'
miRNA:   3'- -UGCa---GGCUCCUa-----CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 44383 0.72 0.577764
Target:  5'- cCGcCCGGGGGgcgugugGGGCcGGGCAcGGCg -3'
miRNA:   3'- uGCaGGCUCCUa------CCCGuCCUGUuCCG- -5'
28837 3' -57.3 NC_006146.1 + 168301 0.72 0.577764
Target:  5'- gGCGccggCCGGGGGcugaggGGGCucccgAGGGCGGGGCc -3'
miRNA:   3'- -UGCa---GGCUCCUa-----CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 167369 0.72 0.577764
Target:  5'- gGCGccggCCGGGGGcugaggGGGCucccgAGGGCGGGGCc -3'
miRNA:   3'- -UGCa---GGCUCCUa-----CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 169233 0.72 0.577764
Target:  5'- gGCGccggCCGGGGGcugaggGGGCucccgAGGGCGGGGCc -3'
miRNA:   3'- -UGCa---GGCUCCUa-----CCCG-----UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 161764 0.72 0.587728
Target:  5'- -gGUCCGAGG--GGGCGccuGGGCGGGGg -3'
miRNA:   3'- ugCAGGCUCCuaCCCGU---CCUGUUCCg -5'
28837 3' -57.3 NC_006146.1 + 170106 0.72 0.587728
Target:  5'- gGCG-CCGcAGGggGGGCcGG-CGGGGCg -3'
miRNA:   3'- -UGCaGGC-UCCuaCCCGuCCuGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 21373 0.71 0.594722
Target:  5'- cGCGUCCGcAGGA-GGGUcuuccuugaagaagAGGAC-GGGCc -3'
miRNA:   3'- -UGCAGGC-UCCUaCCCG--------------UCCUGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 24451 0.71 0.594722
Target:  5'- cGCGUCCGcAGGA-GGGUcuuccuugaagaagAGGAC-GGGCc -3'
miRNA:   3'- -UGCAGGC-UCCUaCCCG--------------UCCUGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 27529 0.71 0.594722
Target:  5'- cGCGUCCGcAGGA-GGGUcuuccuugaagaagAGGAC-GGGCc -3'
miRNA:   3'- -UGCAGGC-UCCUaCCCG--------------UCCUGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 18295 0.71 0.594722
Target:  5'- cGCGUCCGcAGGA-GGGUcuuccuugaagaagAGGAC-GGGCc -3'
miRNA:   3'- -UGCAGGC-UCCUaCCCG--------------UCCUGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 15217 0.71 0.594722
Target:  5'- cGCGUCCGcAGGA-GGGUcuuccuugaagaagAGGAC-GGGCc -3'
miRNA:   3'- -UGCAGGC-UCCUaCCCG--------------UCCUGuUCCG- -5'
28837 3' -57.3 NC_006146.1 + 32006 0.71 0.597723
Target:  5'- cACG-CUagGAGGAcagagGGGCcucGGGACGAGGCg -3'
miRNA:   3'- -UGCaGG--CUCCUa----CCCG---UCCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 127836 0.71 0.61778
Target:  5'- aGCcUCCccugGAGGGUGGGCuuGGGCAGccGGCg -3'
miRNA:   3'- -UGcAGG----CUCCUACCCGu-CCUGUU--CCG- -5'
28837 3' -57.3 NC_006146.1 + 112720 0.71 0.61778
Target:  5'- gGCGUCCcuGAGGcccGUGuacaGGCAGGugguCGAGGCg -3'
miRNA:   3'- -UGCAGG--CUCC---UAC----CCGUCCu---GUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 18994 0.71 0.617781
Target:  5'- gGCGgccggacCCGAGGA-GGcGCcuGGGCGAGGCu -3'
miRNA:   3'- -UGCa------GGCUCCUaCC-CGu-CCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 15917 0.71 0.617781
Target:  5'- gGCGgccggacCCGAGGA-GGcGCcuGGGCGAGGCu -3'
miRNA:   3'- -UGCa------GGCUCCUaCC-CGu-CCUGUUCCG- -5'
28837 3' -57.3 NC_006146.1 + 22072 0.71 0.617781
Target:  5'- gGCGgccggacCCGAGGA-GGcGCcuGGGCGAGGCu -3'
miRNA:   3'- -UGCa------GGCUCCUaCC-CGu-CCUGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.