Results 21 - 40 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 22072 | 0.71 | 0.617781 |
Target: 5'- gGCGgccggacCCGAGGA-GGcGCcuGGGCGAGGCu -3' miRNA: 3'- -UGCa------GGCUCCUaCC-CGu-CCUGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 27529 | 0.71 | 0.594722 |
Target: 5'- cGCGUCCGcAGGA-GGGUcuuccuugaagaagAGGAC-GGGCc -3' miRNA: 3'- -UGCAGGC-UCCUaCCCG--------------UCCUGuUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 168301 | 0.72 | 0.577764 |
Target: 5'- gGCGccggCCGGGGGcugaggGGGCucccgAGGGCGGGGCc -3' miRNA: 3'- -UGCa---GGCUCCUa-----CCCG-----UCCUGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 42259 | 0.73 | 0.480178 |
Target: 5'- cCGUCCccgaaugcgggagGAGGAUGGGUGGuGGCGGGGa -3' miRNA: 3'- uGCAGG-------------CUCCUACCCGUC-CUGUUCCg -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 169174 | 0.69 | 0.727183 |
Target: 5'- gGCGcCUGcAGGggGGGCcGG-CGGGGCg -3' miRNA: 3'- -UGCaGGC-UCCuaCCCGuCCuGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 168430 | 0.7 | 0.697819 |
Target: 5'- cUGgCgGGGGAgaggGGGCAGGGCu-GGCg -3' miRNA: 3'- uGCaGgCUCCUa---CCCGUCCUGuuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 21373 | 0.71 | 0.594722 |
Target: 5'- cGCGUCCGcAGGA-GGGUcuuccuugaagaagAGGAC-GGGCc -3' miRNA: 3'- -UGCAGGC-UCCUaCCCG--------------UCCUGuUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 89768 | 0.74 | 0.45723 |
Target: 5'- gGCGgaaaUCGAGGAcgagGGGCccauggccguggacgAGGACGAGGCa -3' miRNA: 3'- -UGCa---GGCUCCUa---CCCG---------------UCCUGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 167498 | 0.7 | 0.697819 |
Target: 5'- cUGgCgGGGGAgaggGGGCAGGGCu-GGCg -3' miRNA: 3'- uGCaGgCUCCUa---CCCGUCCUGuuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 4665 | 0.74 | 0.453613 |
Target: 5'- cCGUCCuGGGccGGGU-GGGCGAGGCg -3' miRNA: 3'- uGCAGGcUCCuaCCCGuCCUGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 24451 | 0.71 | 0.594722 |
Target: 5'- cGCGUCCGcAGGA-GGGUcuuccuugaagaagAGGAC-GGGCc -3' miRNA: 3'- -UGCAGGC-UCCUaCCCG--------------UCCUGuUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 25150 | 0.71 | 0.617781 |
Target: 5'- gGCGgccggacCCGAGGA-GGcGCcuGGGCGAGGCu -3' miRNA: 3'- -UGCa------GGCUCCUaCC-CGu-CCUGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 170106 | 0.72 | 0.587728 |
Target: 5'- gGCG-CCGcAGGggGGGCcGG-CGGGGCg -3' miRNA: 3'- -UGCaGGC-UCCuaCCCGuCCuGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 169233 | 0.72 | 0.577764 |
Target: 5'- gGCGccggCCGGGGGcugaggGGGCucccgAGGGCGGGGCc -3' miRNA: 3'- -UGCa---GGCUCCUa-----CCCG-----UCCUGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 55017 | 0.72 | 0.53834 |
Target: 5'- gGCGggaUGGGGgcGGGCGGGAUggGGg -3' miRNA: 3'- -UGCag-GCUCCuaCCCGUCCUGuuCCg -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 12838 | 0.73 | 0.518969 |
Target: 5'- gGCGgccggacCCGAGGA-GGcGCcuGGGGCGAGGCu -3' miRNA: 3'- -UGCa------GGCUCCUaCC-CG--UCCUGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 64553 | 0.69 | 0.755835 |
Target: 5'- -aGUCUcGGGuguUGGGCAGGaaGCAGGGg -3' miRNA: 3'- ugCAGGcUCCu--ACCCGUCC--UGUUCCg -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 86298 | 0.69 | 0.734903 |
Target: 5'- cUGUCCGgcauggcuggaguAGGAggcccUGGGCAGGGucuugauCAGGGCc -3' miRNA: 3'- uGCAGGC-------------UCCU-----ACCCGUCCU-------GUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 85566 | 0.69 | 0.717462 |
Target: 5'- -gGUCgGGGGcacGUGGGguGGcAgGAGGCa -3' miRNA: 3'- ugCAGgCUCC---UACCCguCC-UgUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 169362 | 0.7 | 0.697819 |
Target: 5'- cUGgCgGGGGAgaggGGGCAGGGCu-GGCg -3' miRNA: 3'- uGCaGgCUCCUa---CCCGUCCUGuuCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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