Results 1 - 20 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28837 | 3' | -57.3 | NC_006146.1 | + | 170293 | 0.7 | 0.697819 |
Target: 5'- cUGgCgGGGGAgaggGGGCAGGGCu-GGCg -3' miRNA: 3'- uGCaGgCUCCUa---CCCGUCCUGuuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 170164 | 0.72 | 0.577764 |
Target: 5'- gGCGccggCCGGGGGcugaggGGGCucccgAGGGCGGGGCc -3' miRNA: 3'- -UGCa---GGCUCCUa-----CCCG-----UCCUGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 170106 | 0.72 | 0.587728 |
Target: 5'- gGCG-CCGcAGGggGGGCcGG-CGGGGCg -3' miRNA: 3'- -UGCaGGC-UCCuaCCCGuCCuGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 169990 | 0.67 | 0.826983 |
Target: 5'- cGCGcCCGGGGucccgggGGGCGGcGCGcGGCc -3' miRNA: 3'- -UGCaGGCUCCua-----CCCGUCcUGUuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 169362 | 0.7 | 0.697819 |
Target: 5'- cUGgCgGGGGAgaggGGGCAGGGCu-GGCg -3' miRNA: 3'- uGCaGgCUCCUa---CCCGUCCUGuuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 169233 | 0.72 | 0.577764 |
Target: 5'- gGCGccggCCGGGGGcugaggGGGCucccgAGGGCGGGGCc -3' miRNA: 3'- -UGCa---GGCUCCUa-----CCCG-----UCCUGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 169174 | 0.69 | 0.727183 |
Target: 5'- gGCGcCUGcAGGggGGGCcGG-CGGGGCg -3' miRNA: 3'- -UGCaGGC-UCCuaCCCGuCCuGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 169058 | 0.67 | 0.826983 |
Target: 5'- cGCGcCCGGGGucccgggGGGCGGcGCGcGGCc -3' miRNA: 3'- -UGCaGGCUCCua-----CCCGUCcUGUuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 168430 | 0.7 | 0.697819 |
Target: 5'- cUGgCgGGGGAgaggGGGCAGGGCu-GGCg -3' miRNA: 3'- uGCaGgCUCCUa---CCCGUCCUGuuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 168301 | 0.72 | 0.577764 |
Target: 5'- gGCGccggCCGGGGGcugaggGGGCucccgAGGGCGGGGCc -3' miRNA: 3'- -UGCa---GGCUCCUa-----CCCG-----UCCUGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 168242 | 0.69 | 0.727183 |
Target: 5'- gGCGcCUGcAGGggGGGCcGG-CGGGGCg -3' miRNA: 3'- -UGCaGGC-UCCuaCCCGuCCuGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 168126 | 0.67 | 0.826983 |
Target: 5'- cGCGcCCGGGGucccgggGGGCGGcGCGcGGCc -3' miRNA: 3'- -UGCaGGCUCCua-----CCCGUCcUGUuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 167498 | 0.7 | 0.697819 |
Target: 5'- cUGgCgGGGGAgaggGGGCAGGGCu-GGCg -3' miRNA: 3'- uGCaGgCUCCUa---CCCGUCCUGuuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 167369 | 0.72 | 0.577764 |
Target: 5'- gGCGccggCCGGGGGcugaggGGGCucccgAGGGCGGGGCc -3' miRNA: 3'- -UGCa---GGCUCCUa-----CCCG-----UCCUGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 167310 | 0.69 | 0.727183 |
Target: 5'- gGCGcCUGcAGGggGGGCcGG-CGGGGCg -3' miRNA: 3'- -UGCaGGC-UCCuaCCCGuCCuGUUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 167194 | 0.67 | 0.826983 |
Target: 5'- cGCGcCCGGGGucccgggGGGCGGcGCGcGGCc -3' miRNA: 3'- -UGCaGGCUCCua-----CCCGUCcUGUuCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 162394 | 0.66 | 0.865432 |
Target: 5'- cGCGcCCGGGaccccGGUGGGCcAGGAUgguggggAAGGUa -3' miRNA: 3'- -UGCaGGCUC-----CUACCCG-UCCUG-------UUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 161764 | 0.72 | 0.587728 |
Target: 5'- -gGUCCGAGG--GGGCGccuGGGCGGGGg -3' miRNA: 3'- ugCAGGCUCCuaCCCGU---CCUGUUCCg -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 158554 | 0.66 | 0.880463 |
Target: 5'- cGCGgagggcCUGAGGcccagGGGCgagGGGACuGAGGCg -3' miRNA: 3'- -UGCa-----GGCUCCua---CCCG---UCCUG-UUCCG- -5' |
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28837 | 3' | -57.3 | NC_006146.1 | + | 158134 | 0.66 | 0.880463 |
Target: 5'- cGCGUCC-AGGuccGGCAGGuCAcagguGGGCu -3' miRNA: 3'- -UGCAGGcUCCuacCCGUCCuGU-----UCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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