miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2884 3' -54.3 NC_001493.1 + 10732 1.1 0.002996
Target:  5'- aAAAUCUCCGGGUCUCGACCAGAUCCCg -3'
miRNA:   3'- -UUUAGAGGCCCAGAGCUGGUCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 126286 1.1 0.002996
Target:  5'- aAAAUCUCCGGGUCUCGACCAGAUCCCg -3'
miRNA:   3'- -UUUAGAGGCCCAGAGCUGGUCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 126182 1.02 0.011293
Target:  5'- aAAAUCUCCGGGUCUCGACCcGAUCCCg -3'
miRNA:   3'- -UUUAGAGGCCCAGAGCUGGuCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 10627 1.02 0.011293
Target:  5'- aAAAUCUCCGGGUCUCGACCcGAUCCCg -3'
miRNA:   3'- -UUUAGAGGCCCAGAGCUGGuCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 10704 0.79 0.294951
Target:  5'- aAAAUCUCUaaGUCUCGACCcGAUCCCg -3'
miRNA:   3'- -UUUAGAGGccCAGAGCUGGuCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 37619 0.75 0.516002
Target:  5'- ---gCUCCGGGcacgcucaaguaCUCGcACCAGAUCCCc -3'
miRNA:   3'- uuuaGAGGCCCa-----------GAGC-UGGUCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 106528 0.74 0.547181
Target:  5'- uGAUCgCCaGGGUCUCGGgugggaaauacgcCCGGGUCCCc -3'
miRNA:   3'- uUUAGaGG-CCCAGAGCU-------------GGUCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 51641 0.74 0.548197
Target:  5'- ---gCUCCGGGUCUCcGCUuGAUCCa -3'
miRNA:   3'- uuuaGAGGCCCAGAGcUGGuCUAGGg -5'
2884 3' -54.3 NC_001493.1 + 10829 0.73 0.630841
Target:  5'- --cUCUCCGGGUgUCGAacCCGGGgagCUCg -3'
miRNA:   3'- uuuAGAGGCCCAgAGCU--GGUCUa--GGG- -5'
2884 3' -54.3 NC_001493.1 + 126383 0.73 0.630841
Target:  5'- --cUCUCCGGGUgUCGAacCCGGGgagCUCg -3'
miRNA:   3'- uuuAGAGGCCCAgAGCU--GGUCUa--GGG- -5'
2884 3' -54.3 NC_001493.1 + 123444 0.72 0.682765
Target:  5'- cAAUUUUCGGGUCacggggCGACCGGuguccAUCCCu -3'
miRNA:   3'- uUUAGAGGCCCAGa-----GCUGGUC-----UAGGG- -5'
2884 3' -54.3 NC_001493.1 + 7890 0.72 0.682765
Target:  5'- cAAUUUUCGGGUCacggggCGACCGGuguccAUCCCu -3'
miRNA:   3'- uUUAGAGGCCCAGa-----GCUGGUC-----UAGGG- -5'
2884 3' -54.3 NC_001493.1 + 130602 0.72 0.693056
Target:  5'- ---cCUCCGGGgccccucgcgUCUCGACgAGAgcaCCCa -3'
miRNA:   3'- uuuaGAGGCCC----------AGAGCUGgUCUa--GGG- -5'
2884 3' -54.3 NC_001493.1 + 15048 0.72 0.693056
Target:  5'- ---cCUCCGGGgccccucgcgUCUCGACgAGAgcaCCCa -3'
miRNA:   3'- uuuaGAGGCCC----------AGAGCUGgUCUa--GGG- -5'
2884 3' -54.3 NC_001493.1 + 22495 0.71 0.703295
Target:  5'- uGAAUUUUCGGGUCUCaucaCAGggCCCg -3'
miRNA:   3'- -UUUAGAGGCCCAGAGcug-GUCuaGGG- -5'
2884 3' -54.3 NC_001493.1 + 94675 0.71 0.703295
Target:  5'- cAGUUaCCGGGUCgugccCGACCGGGgguacgUCCCg -3'
miRNA:   3'- uUUAGaGGCCCAGa----GCUGGUCU------AGGG- -5'
2884 3' -54.3 NC_001493.1 + 43450 0.71 0.733599
Target:  5'- uGGAUCUCCGGGgggUCgaucugcgCGGCC-GAUCUCg -3'
miRNA:   3'- -UUUAGAGGCCC---AGa-------GCUGGuCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 10676 0.71 0.743531
Target:  5'- aAAAUCUCCaaGUCUCgGACCGGGgcugugCCCa -3'
miRNA:   3'- -UUUAGAGGccCAGAG-CUGGUCUa-----GGG- -5'
2884 3' -54.3 NC_001493.1 + 126231 0.71 0.743531
Target:  5'- aAAAUCUCCaaGUCUCgGACCGGGgcugugCCCa -3'
miRNA:   3'- -UUUAGAGGccCAGAG-CUGGUCUa-----GGG- -5'
2884 3' -54.3 NC_001493.1 + 88130 0.7 0.757264
Target:  5'- ---aCUCCGaGUCUCGAUCGaucgcuccaggcgccGAUCCCg -3'
miRNA:   3'- uuuaGAGGCcCAGAGCUGGU---------------CUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.