miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2884 3' -54.3 NC_001493.1 + 106528 0.74 0.547181
Target:  5'- uGAUCgCCaGGGUCUCGGgugggaaauacgcCCGGGUCCCc -3'
miRNA:   3'- uUUAGaGG-CCCAGAGCU-------------GGUCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 131655 0.66 0.936845
Target:  5'- -cGUC-CCGGGgCUCGACCgcucgAGAcUCCUc -3'
miRNA:   3'- uuUAGaGGCCCaGAGCUGG-----UCU-AGGG- -5'
2884 3' -54.3 NC_001493.1 + 16100 0.66 0.936845
Target:  5'- -cGUC-CCGGGgCUCGACCgcucgAGAcUCCUc -3'
miRNA:   3'- uuUAGaGGCCCaGAGCUGG-----UCU-AGGG- -5'
2884 3' -54.3 NC_001493.1 + 110501 0.66 0.931781
Target:  5'- --uUCUUCGGGaUCUCGACCcaccGAUgCg -3'
miRNA:   3'- uuuAGAGGCCC-AGAGCUGGu---CUAgGg -5'
2884 3' -54.3 NC_001493.1 + 95489 0.66 0.92647
Target:  5'- cGAUCggggaggugaCGGGUCguuucugguUCGACgAGGUCCCc -3'
miRNA:   3'- uUUAGag--------GCCCAG---------AGCUGgUCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 37553 0.66 0.92647
Target:  5'- -------gGGGUCgUCGACCGGGUCgCCc -3'
miRNA:   3'- uuuagaggCCCAG-AGCUGGUCUAG-GG- -5'
2884 3' -54.3 NC_001493.1 + 23375 0.66 0.92647
Target:  5'- -uGUCUUCGGuGgcCUCGGCCAGcAUCUg -3'
miRNA:   3'- uuUAGAGGCC-Ca-GAGCUGGUC-UAGGg -5'
2884 3' -54.3 NC_001493.1 + 110354 0.67 0.915105
Target:  5'- ---aCUCCGGGcgcgggCUCGACCuucAGGUCa- -3'
miRNA:   3'- uuuaGAGGCCCa-----GAGCUGG---UCUAGgg -5'
2884 3' -54.3 NC_001493.1 + 90839 0.67 0.895551
Target:  5'- --cUCUCgacucggagccggCGGGcCUCGAUCAGAUCUUu -3'
miRNA:   3'- uuuAGAG-------------GCCCaGAGCUGGUCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 126146 0.69 0.839069
Target:  5'- gAGAUUUUCGGGaccugaccacgcggCUCGAuCCGGGUCCUc -3'
miRNA:   3'- -UUUAGAGGCCCa-------------GAGCU-GGUCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 10592 0.69 0.839069
Target:  5'- gAGAUUUUCGGGaccugaccacgcggCUCGAuCCGGGUCCUc -3'
miRNA:   3'- -UUUAGAGGCCCa-------------GAGCU-GGUCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 51641 0.74 0.548197
Target:  5'- ---gCUCCGGGUCUCcGCUuGAUCCa -3'
miRNA:   3'- uuuaGAGGCCCAGAGcUGGuCUAGGg -5'
2884 3' -54.3 NC_001493.1 + 94675 0.71 0.703295
Target:  5'- cAGUUaCCGGGUCgugccCGACCGGGgguacgUCCCg -3'
miRNA:   3'- uUUAGaGGCCCAGa----GCUGGUCU------AGGG- -5'
2884 3' -54.3 NC_001493.1 + 43450 0.71 0.733599
Target:  5'- uGGAUCUCCGGGgggUCgaucugcgCGGCC-GAUCUCg -3'
miRNA:   3'- -UUUAGAGGCCC---AGa-------GCUGGuCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 42097 0.7 0.782152
Target:  5'- -uGUCUCCGGaccUUCGACCAGAagCUCg -3'
miRNA:   3'- uuUAGAGGCCca-GAGCUGGUCUa-GGG- -5'
2884 3' -54.3 NC_001493.1 + 112713 0.69 0.800664
Target:  5'- cGAUC-CCGGGgcuUCUCGAUgGGucUCCCg -3'
miRNA:   3'- uUUAGaGGCCC---AGAGCUGgUCu-AGGG- -5'
2884 3' -54.3 NC_001493.1 + 86562 0.69 0.809688
Target:  5'- cGAUCUCgGucaguaugaGGUCucucUCGGCCGGGUCCUg -3'
miRNA:   3'- uUUAGAGgC---------CCAG----AGCUGGUCUAGGG- -5'
2884 3' -54.3 NC_001493.1 + 23686 0.69 0.835723
Target:  5'- gGGAUC-CCGGGcgggaUCaugacCGACCAGuAUCCCg -3'
miRNA:   3'- -UUUAGaGGCCC-----AGa----GCUGGUC-UAGGG- -5'
2884 3' -54.3 NC_001493.1 + 10788 0.66 0.946235
Target:  5'- -cGUC-CCGaGaGUCUCGACCgcGGAggaCCCg -3'
miRNA:   3'- uuUAGaGGC-C-CAGAGCUGG--UCUa--GGG- -5'
2884 3' -54.3 NC_001493.1 + 10732 1.1 0.002996
Target:  5'- aAAAUCUCCGGGUCUCGACCAGAUCCCg -3'
miRNA:   3'- -UUUAGAGGCCCAGAGCUGGUCUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.