miRNA display CGI


Results 41 - 60 of 526 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28841 5' -57.8 NC_006146.1 + 156323 0.66 0.872551
Target:  5'- gGCgCGGGuCCGGGA-UggGGCucacgccccgaaAGCGGCc -3'
miRNA:   3'- -CG-GCCCuGGCUUUgGuuCCG------------UCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 2439 0.66 0.872551
Target:  5'- cCCaGGAgaGggGCCGGGGgC-GCGGCc -3'
miRNA:   3'- cGGcCCUggCuuUGGUUCC-GuCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 143198 0.66 0.872551
Target:  5'- aGgCGGGcCUGAAGCCcGGGUugaGGCg -3'
miRNA:   3'- -CgGCCCuGGCUUUGGuUCCGucgCCG- -5'
28841 5' -57.8 NC_006146.1 + 127751 0.66 0.872551
Target:  5'- aGCCuGGagaagauuaucGCCGAccucagGGCCAAGGCaccuGGCGGa -3'
miRNA:   3'- -CGGcCC-----------UGGCU------UUGGUUCCG----UCGCCg -5'
28841 5' -57.8 NC_006146.1 + 170580 0.66 0.872551
Target:  5'- gGCCGGGAgaaUGAcAGCUggGcGUGGCGaGCg -3'
miRNA:   3'- -CGGCCCUg--GCU-UUGGuuC-CGUCGC-CG- -5'
28841 5' -57.8 NC_006146.1 + 41293 0.66 0.872551
Target:  5'- cCCGGcGACgGAGacgGCgGAGGCA-UGGCg -3'
miRNA:   3'- cGGCC-CUGgCUU---UGgUUCCGUcGCCG- -5'
28841 5' -57.8 NC_006146.1 + 88531 0.66 0.872551
Target:  5'- cCCGGGugUGGAGCCcgcgauGGCugcauccGUGGUg -3'
miRNA:   3'- cGGCCCugGCUUUGGuu----CCGu------CGCCG- -5'
28841 5' -57.8 NC_006146.1 + 168347 0.66 0.872551
Target:  5'- aGCCucaguGGGCUGAAGaaccaggugccCCGAGuaggugucucGCAGCGGCg -3'
miRNA:   3'- -CGGc----CCUGGCUUU-----------GGUUC----------CGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 158589 0.66 0.872551
Target:  5'- aGgCGGGcCUGAAGCCcGGGUugaGGCg -3'
miRNA:   3'- -CgGCCCuGGCUUUGGuUCCGucgCCG- -5'
28841 5' -57.8 NC_006146.1 + 155510 0.66 0.872551
Target:  5'- aGgCGGGcCUGAAGCCcGGGUugaGGCg -3'
miRNA:   3'- -CgGCCCuGGCUUUGGuUCCGucgCCG- -5'
28841 5' -57.8 NC_006146.1 + 152432 0.66 0.872551
Target:  5'- aGgCGGGcCUGAAGCCcGGGUugaGGCg -3'
miRNA:   3'- -CgGCCCuGGCUUUGGuUCCGucgCCG- -5'
28841 5' -57.8 NC_006146.1 + 149354 0.66 0.872551
Target:  5'- aGgCGGGcCUGAAGCCcGGGUugaGGCg -3'
miRNA:   3'- -CgGCCCuGGCUUUGGuUCCGucgCCG- -5'
28841 5' -57.8 NC_006146.1 + 92189 0.66 0.872551
Target:  5'- cCUGGGGCUGcuGCUggGG-GGCGGg -3'
miRNA:   3'- cGGCCCUGGCuuUGGuuCCgUCGCCg -5'
28841 5' -57.8 NC_006146.1 + 92129 0.66 0.872551
Target:  5'- cCUGGGGCUGcuGCUggGG-GGCGGg -3'
miRNA:   3'- cGGCCCUGGCuuUGGuuCCgUCGCCg -5'
28841 5' -57.8 NC_006146.1 + 92040 0.66 0.872551
Target:  5'- cCUGGGGCUGcuGCUggGG-GGCGGg -3'
miRNA:   3'- cGGCCCUGGCuuUGGuuCCgUCGCCg -5'
28841 5' -57.8 NC_006146.1 + 3371 0.66 0.872551
Target:  5'- cCCaGGAgaGggGCCGGGGgC-GCGGCc -3'
miRNA:   3'- cGGcCCUggCuuUGGUUCC-GuCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 1507 0.66 0.872551
Target:  5'- cCCaGGAgaGggGCCGGGGgC-GCGGCc -3'
miRNA:   3'- cGGcCCUggCuuUGGUUCC-GuCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 576 0.66 0.872551
Target:  5'- cCCaGGAgaGggGCCGGGGgC-GCGGCc -3'
miRNA:   3'- cGGcCCUggCuuUGGUUCC-GuCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 146276 0.66 0.872551
Target:  5'- aGgCGGGcCUGAAGCCcGGGUugaGGCg -3'
miRNA:   3'- -CgGCCCuGGCUUUGGuUCCGucgCCG- -5'
28841 5' -57.8 NC_006146.1 + 162015 0.66 0.872551
Target:  5'- cCUGGGAgaCCGGcuCCAcGGUggAGUGGCa -3'
miRNA:   3'- cGGCCCU--GGCUuuGGUuCCG--UCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.