miRNA display CGI


Results 21 - 40 of 526 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28841 5' -57.8 NC_006146.1 + 141576 0.66 0.885702
Target:  5'- aGCCGGGGCCucggggagggagaGAGGagGGGGaGGCGGg -3'
miRNA:   3'- -CGGCCCUGG-------------CUUUggUUCCgUCGCCg -5'
28841 5' -57.8 NC_006146.1 + 150809 0.66 0.885702
Target:  5'- aGCCGGGGCCucggggagggagaGAGGagGGGGaGGCGGg -3'
miRNA:   3'- -CGGCCCUGG-------------CUUUggUUCCgUCGCCg -5'
28841 5' -57.8 NC_006146.1 + 54993 0.66 0.884353
Target:  5'- cCCGGGgugGCCgGAAGCCccccgggcgggaugGGGGCgGGCGGg -3'
miRNA:   3'- cGGCCC---UGG-CUUUGG--------------UUCCG-UCGCCg -5'
28841 5' -57.8 NC_006146.1 + 84377 0.66 0.884353
Target:  5'- aGgCGuGGACCGGgcGGCCAucauggccuccgguAGGCAgGUGGUu -3'
miRNA:   3'- -CgGC-CCUGGCU--UUGGU--------------UCCGU-CGCCG- -5'
28841 5' -57.8 NC_006146.1 + 119135 0.66 0.882315
Target:  5'- uCUGGG-CagaGAGGCCAccuuuuacgcgugucGGGCuauGCGGCg -3'
miRNA:   3'- cGGCCCuGg--CUUUGGU---------------UCCGu--CGCCG- -5'
28841 5' -57.8 NC_006146.1 + 24228 0.66 0.879567
Target:  5'- gGCCGGGGCCGcccACCGcccGGgAG-GGUu -3'
miRNA:   3'- -CGGCCCUGGCuu-UGGUu--CCgUCgCCG- -5'
28841 5' -57.8 NC_006146.1 + 5065 0.66 0.879567
Target:  5'- -gCGGGGCUG--GCCGuuggAGGCGuccacGCGGCc -3'
miRNA:   3'- cgGCCCUGGCuuUGGU----UCCGU-----CGCCG- -5'
28841 5' -57.8 NC_006146.1 + 156202 0.66 0.879567
Target:  5'- aCCGGGACC---GCC-AGGUGGuuGCa -3'
miRNA:   3'- cGGCCCUGGcuuUGGuUCCGUCgcCG- -5'
28841 5' -57.8 NC_006146.1 + 149828 0.66 0.879567
Target:  5'- uCCGGgugGugUGGgcGGCCAGGGCcuCGGCg -3'
miRNA:   3'- cGGCC---CugGCU--UUGGUUCCGucGCCG- -5'
28841 5' -57.8 NC_006146.1 + 168359 0.66 0.879567
Target:  5'- aGCgCGGGGucCCGggGCgGGGGgucgGGCGGg -3'
miRNA:   3'- -CG-GCCCU--GGCuuUGgUUCCg---UCGCCg -5'
28841 5' -57.8 NC_006146.1 + 170222 0.66 0.879567
Target:  5'- aGCgCGGGGucCCGggGCgGGGGgucgGGCGGg -3'
miRNA:   3'- -CG-GCCCU--GGCuuUGgUUCCg---UCGCCg -5'
28841 5' -57.8 NC_006146.1 + 99687 0.66 0.879567
Target:  5'- aGCCaGGACuCGAAGCCcc--CGGCGGg -3'
miRNA:   3'- -CGGcCCUG-GCUUUGGuuccGUCGCCg -5'
28841 5' -57.8 NC_006146.1 + 38174 0.66 0.879567
Target:  5'- aCCGGGGCUacugGGGACCAccGGGCAucGUgaagGGCc -3'
miRNA:   3'- cGGCCCUGG----CUUUGGU--UCCGU--CG----CCG- -5'
28841 5' -57.8 NC_006146.1 + 102888 0.66 0.879567
Target:  5'- aGCCgcaggGGGACgccaGggGCCGuguGGC-GUGGCu -3'
miRNA:   3'- -CGG-----CCCUGg---CuuUGGUu--CCGuCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 169291 0.66 0.879567
Target:  5'- aGCgCGGGGucCCGggGCgGGGGgucgGGCGGg -3'
miRNA:   3'- -CG-GCCCU--GGCuuUGgUUCCg---UCGCCg -5'
28841 5' -57.8 NC_006146.1 + 167427 0.66 0.879567
Target:  5'- aGCgCGGGGucCCGggGCgGGGGgucgGGCGGg -3'
miRNA:   3'- -CG-GCCCU--GGCuuUGgUUCCg---UCGCCg -5'
28841 5' -57.8 NC_006146.1 + 143121 0.66 0.878874
Target:  5'- aGCCGGuGACCuGAGACCcacccuucucgacGGGGCAG-GuGUu -3'
miRNA:   3'- -CGGCC-CUGG-CUUUGG-------------UUCCGUCgC-CG- -5'
28841 5' -57.8 NC_006146.1 + 44668 0.66 0.878874
Target:  5'- cGCCuGGGuCCcaaaacggacgauGAuGCCGguguGGCGGCGGUg -3'
miRNA:   3'- -CGG-CCCuGG-------------CUuUGGUu---CCGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 55936 0.66 0.875382
Target:  5'- gGCCGuGGGCUGcugcgugccccccGCCAucgccgcccagGGGUAGCGGUu -3'
miRNA:   3'- -CGGC-CCUGGCuu-----------UGGU-----------UCCGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 146276 0.66 0.872551
Target:  5'- aGgCGGGcCUGAAGCCcGGGUugaGGCg -3'
miRNA:   3'- -CgGCCCuGGCUUUGGuUCCGucgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.