miRNA display CGI


Results 21 - 40 of 526 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28841 5' -57.8 NC_006146.1 + 13316 0.66 0.865331
Target:  5'- uGCUGGG-C----ACCAGGGCGGUGGa -3'
miRNA:   3'- -CGGCCCuGgcuuUGGUUCCGUCGCCg -5'
28841 5' -57.8 NC_006146.1 + 13559 0.7 0.688305
Target:  5'- cGCCGGGcGCCGGGcuGCgCAagcAGGCcGGgGGCu -3'
miRNA:   3'- -CGGCCC-UGGCUU--UG-GU---UCCG-UCgCCG- -5'
28841 5' -57.8 NC_006146.1 + 13632 0.77 0.29116
Target:  5'- cCUGGGGCUGAcGAUCAagcgccggacacAGGCAGCGGCc -3'
miRNA:   3'- cGGCCCUGGCU-UUGGU------------UCCGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 14006 0.71 0.608754
Target:  5'- gGCCGGG-CUGguGCUggAAGGCGGagGGCa -3'
miRNA:   3'- -CGGCCCuGGCuuUGG--UUCCGUCg-CCG- -5'
28841 5' -57.8 NC_006146.1 + 14108 0.74 0.42052
Target:  5'- gGgCGGGAugUCGggGCUgcuGGCGGCGGCc -3'
miRNA:   3'- -CgGCCCU--GGCuuUGGuu-CCGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 14185 0.75 0.387096
Target:  5'- gGCUGGacccCCGGAGCCuggacgggGAGGCGGUGGCg -3'
miRNA:   3'- -CGGCCcu--GGCUUUGG--------UUCCGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 14393 0.68 0.783203
Target:  5'- gGCCGGGAgaggcagccCCGAGGCgGgcacaggagcAGGCAGUcucuGGUa -3'
miRNA:   3'- -CGGCCCU---------GGCUUUGgU----------UCCGUCG----CCG- -5'
28841 5' -57.8 NC_006146.1 + 14816 0.67 0.834515
Target:  5'- gGCCGGG-CCGGAGg-AGGGCA-CGGUc -3'
miRNA:   3'- -CGGCCCuGGCUUUggUUCCGUcGCCG- -5'
28841 5' -57.8 NC_006146.1 + 14846 0.78 0.278167
Target:  5'- cCCGGGGCCgcggGAGGCCGAGGgGGCaGCc -3'
miRNA:   3'- cGGCCCUGG----CUUUGGUUCCgUCGcCG- -5'
28841 5' -57.8 NC_006146.1 + 15053 0.7 0.688305
Target:  5'- cGCCGGG-CCugcgagGAGGCacuGGCGGgGGCu -3'
miRNA:   3'- -CGGCCCuGG------CUUUGguuCCGUCgCCG- -5'
28841 5' -57.8 NC_006146.1 + 15106 0.66 0.865331
Target:  5'- cUCGGuGGCCc---CCAGGGCcaccgAGCGGCu -3'
miRNA:   3'- cGGCC-CUGGcuuuGGUUCCG-----UCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 15707 0.72 0.569139
Target:  5'- -aCGGGGCCacuGGCCGAGGagaGGgGGCu -3'
miRNA:   3'- cgGCCCUGGcu-UUGGUUCCg--UCgCCG- -5'
28841 5' -57.8 NC_006146.1 + 15914 0.7 0.678432
Target:  5'- uCCGGcGGCCGGAcCCGAGGaGGCgccugGGCg -3'
miRNA:   3'- cGGCC-CUGGCUUuGGUUCCgUCG-----CCG- -5'
28841 5' -57.8 NC_006146.1 + 16191 0.7 0.688305
Target:  5'- gGCgGGGuCCGGccucucCUggGGCAGCaGGCu -3'
miRNA:   3'- -CGgCCCuGGCUuu----GGuuCCGUCG-CCG- -5'
28841 5' -57.8 NC_006146.1 + 17471 0.68 0.783203
Target:  5'- gGCCGGGAgaggcagccCCGAGGCgGgcacaggagcAGGCAGUcucuGGUa -3'
miRNA:   3'- -CGGCCCU---------GGCUUUGgU----------UCCGUCG----CCG- -5'
28841 5' -57.8 NC_006146.1 + 17606 0.66 0.886373
Target:  5'- cCCGGGcCUGguGCCuGGaGCAGaaaaGGCa -3'
miRNA:   3'- cGGCCCuGGCuuUGGuUC-CGUCg---CCG- -5'
28841 5' -57.8 NC_006146.1 + 18991 0.7 0.678432
Target:  5'- uCCGGcGGCCGGAcCCGAGGaGGCgccugGGCg -3'
miRNA:   3'- cGGCC-CUGGCUUuGGUUCCgUCG-----CCG- -5'
28841 5' -57.8 NC_006146.1 + 19269 0.7 0.688305
Target:  5'- gGCgGGGuCCGGccucucCUggGGCAGCaGGCu -3'
miRNA:   3'- -CGgCCCuGGCUuu----GGuuCCGUCG-CCG- -5'
28841 5' -57.8 NC_006146.1 + 20549 0.68 0.783203
Target:  5'- gGCCGGGAgaggcagccCCGAGGCgGgcacaggagcAGGCAGUcucuGGUa -3'
miRNA:   3'- -CGGCCCU---------GGCUUUGgU----------UCCGUCG----CCG- -5'
28841 5' -57.8 NC_006146.1 + 21625 0.67 0.834515
Target:  5'- gGCCGaGGACCc-GGCCuacgcGG-AGCGGCa -3'
miRNA:   3'- -CGGC-CCUGGcuUUGGuu---CCgUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.