miRNA display CGI


Results 21 - 40 of 526 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28841 5' -57.8 NC_006146.1 + 44313 0.78 0.253575
Target:  5'- aGUgGGGGCUGggGCCGuGGCAGCcgggGGCu -3'
miRNA:   3'- -CGgCCCUGGCuuUGGUuCCGUCG----CCG- -5'
28841 5' -57.8 NC_006146.1 + 45158 0.78 0.265641
Target:  5'- gGgUGGGACgGAGGCCucggaaucGGCGGCGGCg -3'
miRNA:   3'- -CgGCCCUGgCUUUGGuu------CCGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 81644 0.78 0.265641
Target:  5'- uGCCGGGACguuggggcuCGGAggguGCCGGGGaAGCGGCg -3'
miRNA:   3'- -CGGCCCUG---------GCUU----UGGUUCCgUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 113723 0.78 0.271846
Target:  5'- aGCCGGGACggUGAAGUCGuggaAGGUAGCGGCc -3'
miRNA:   3'- -CGGCCCUG--GCUUUGGU----UCCGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 44211 0.78 0.278167
Target:  5'- aGCCGGGGgCGGugccuugguGACCGucuccucuggccGGGCGGCGGUg -3'
miRNA:   3'- -CGGCCCUgGCU---------UUGGU------------UCCGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 14846 0.78 0.278167
Target:  5'- cCCGGGGCCgcggGAGGCCGAGGgGGCaGCc -3'
miRNA:   3'- cGGCCCUGG----CUUUGGUUCCgUCGcCG- -5'
28841 5' -57.8 NC_006146.1 + 128783 0.78 0.284605
Target:  5'- gGCCagcaGGGCCGAAgcgugaucgGCCAcacagggagGGGCGGCGGCa -3'
miRNA:   3'- -CGGc---CCUGGCUU---------UGGU---------UCCGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 13632 0.77 0.29116
Target:  5'- cCUGGGGCUGAcGAUCAagcgccggacacAGGCAGCGGCc -3'
miRNA:   3'- cGGCCCUGGCU-UUGGU------------UCCGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 51668 0.77 0.303939
Target:  5'- gGCCGGuGCCGGGACuCAgaauuauuaaaccGGGUGGCGGCu -3'
miRNA:   3'- -CGGCCcUGGCUUUG-GU-------------UCCGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 107038 0.77 0.304623
Target:  5'- uGCUGGGACUGgcACCAcguguGGCgAGUGGCu -3'
miRNA:   3'- -CGGCCCUGGCuuUGGUu----CCG-UCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 137716 0.77 0.304623
Target:  5'- cCCGGaGGCCaGGACCGA-GCGGCGGCg -3'
miRNA:   3'- cGGCC-CUGGcUUUGGUUcCGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 56131 0.77 0.310836
Target:  5'- gGCCGcGGGCCccGAGACCGAGaGCAccuccccGCGGCc -3'
miRNA:   3'- -CGGC-CCUGG--CUUUGGUUC-CGU-------CGCCG- -5'
28841 5' -57.8 NC_006146.1 + 4663 0.76 0.325705
Target:  5'- cGCCGuccuGGGCCGGguGGgCGAGGCGGgGGCa -3'
miRNA:   3'- -CGGC----CCUGGCU--UUgGUUCCGUCgCCG- -5'
28841 5' -57.8 NC_006146.1 + 170689 0.76 0.325705
Target:  5'- cGCCccgGGGACCGucGCgGGGGCAcCGGCg -3'
miRNA:   3'- -CGG---CCCUGGCuuUGgUUCCGUcGCCG- -5'
28841 5' -57.8 NC_006146.1 + 34075 0.76 0.332969
Target:  5'- gGCaCGGGGCCGggGgucCCGggGGGCAGCcGCg -3'
miRNA:   3'- -CG-GCCCUGGCuuU---GGU--UCCGUCGcCG- -5'
28841 5' -57.8 NC_006146.1 + 57037 0.76 0.340351
Target:  5'- gGCCGGGG-CGAAgccGCCAGGGUugaGGCGGg -3'
miRNA:   3'- -CGGCCCUgGCUU---UGGUUCCG---UCGCCg -5'
28841 5' -57.8 NC_006146.1 + 127500 0.76 0.363202
Target:  5'- gGCgGGGGUCGcAGCCGGGGCAGaGGCa -3'
miRNA:   3'- -CGgCCCUGGCuUUGGUUCCGUCgCCG- -5'
28841 5' -57.8 NC_006146.1 + 53316 0.76 0.363202
Target:  5'- gGCCGGaGuCCGAGcCCGAGGaggccCGGCGGCc -3'
miRNA:   3'- -CGGCC-CuGGCUUuGGUUCC-----GUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 33330 0.76 0.363202
Target:  5'- uCCGGGGuCCGGGugcuCCGGGGCAGCcgGGUg -3'
miRNA:   3'- cGGCCCU-GGCUUu---GGUUCCGUCG--CCG- -5'
28841 5' -57.8 NC_006146.1 + 120981 0.75 0.371052
Target:  5'- uCCGGGACCGAGugGCCu---CGGCGGCc -3'
miRNA:   3'- cGGCCCUGGCUU--UGGuuccGUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.