miRNA display CGI


Results 21 - 40 of 526 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28841 5' -57.8 NC_006146.1 + 89795 0.75 0.371052
Target:  5'- gGCCGuGGACgaggaCGAGGCaGAGGCGGgGGCg -3'
miRNA:   3'- -CGGC-CCUG-----GCUUUGgUUCCGUCgCCG- -5'
28841 5' -57.8 NC_006146.1 + 57037 0.76 0.340351
Target:  5'- gGCCGGGG-CGAAgccGCCAGGGUugaGGCGGg -3'
miRNA:   3'- -CGGCCCUgGCUU---UGGUUCCG---UCGCCg -5'
28841 5' -57.8 NC_006146.1 + 45047 0.79 0.247712
Target:  5'- gGCCGGGGCCGGcuCCcuAGG-GGCGGCu -3'
miRNA:   3'- -CGGCCCUGGCUuuGGu-UCCgUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 169264 0.82 0.145092
Target:  5'- gGgCGGGGCCGggGCCu-GGCGGgGGCc -3'
miRNA:   3'- -CgGCCCUGGCuuUGGuuCCGUCgCCG- -5'
28841 5' -57.8 NC_006146.1 + 38076 0.73 0.511081
Target:  5'- gGCCaaaGGGGgaGAGuCgAAGGCAGCGGCc -3'
miRNA:   3'- -CGG---CCCUggCUUuGgUUCCGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 163218 0.74 0.464654
Target:  5'- aGCCGGGcagGCCGuAGgCAGGGUAGCGcuGCu -3'
miRNA:   3'- -CGGCCC---UGGCuUUgGUUCCGUCGC--CG- -5'
28841 5' -57.8 NC_006146.1 + 170689 0.76 0.325705
Target:  5'- cGCCccgGGGACCGucGCgGGGGCAcCGGCg -3'
miRNA:   3'- -CGG---CCCUGGCuuUGgUUCCGUcGCCG- -5'
28841 5' -57.8 NC_006146.1 + 168332 0.82 0.145092
Target:  5'- gGgCGGGGCCGggGCCu-GGCGGgGGCc -3'
miRNA:   3'- -CgGCCCUGGCuuUGGuuCCGUCgCCG- -5'
28841 5' -57.8 NC_006146.1 + 44080 0.74 0.455631
Target:  5'- uGCCGGGACUGggGugguuCCAccucGGGCcGCGcGCu -3'
miRNA:   3'- -CGGCCCUGGCuuU-----GGU----UCCGuCGC-CG- -5'
28841 5' -57.8 NC_006146.1 + 167400 0.82 0.145092
Target:  5'- gGgCGGGGCCGggGCCu-GGCGGgGGCc -3'
miRNA:   3'- -CgGCCCUGGCuuUGGuuCCGUCgCCG- -5'
28841 5' -57.8 NC_006146.1 + 34075 0.76 0.332969
Target:  5'- gGCaCGGGGCCGggGgucCCGggGGGCAGCcGCg -3'
miRNA:   3'- -CG-GCCCUGGCuuU---GGU--UCCGUCGcCG- -5'
28841 5' -57.8 NC_006146.1 + 2803 0.75 0.403589
Target:  5'- cGCCaGcaGGCCuuccAGACCAAGGCGGUGGCg -3'
miRNA:   3'- -CGGcC--CUGGc---UUUGGUUCCGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 44211 0.78 0.278167
Target:  5'- aGCCGGGGgCGGugccuugguGACCGucuccucuggccGGGCGGCGGUg -3'
miRNA:   3'- -CGGCCCUgGCU---------UUGGU------------UCCGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 44313 0.78 0.253575
Target:  5'- aGUgGGGGCUGggGCCGuGGCAGCcgggGGCu -3'
miRNA:   3'- -CGgCCCUGGCuuUGGUuCCGUCG----CCG- -5'
28841 5' -57.8 NC_006146.1 + 117231 0.8 0.208262
Target:  5'- cCCGGGcuuccuggaaagcgGCCGggGCCAGGGgGGuCGGCa -3'
miRNA:   3'- cGGCCC--------------UGGCuuUGGUUCCgUC-GCCG- -5'
28841 5' -57.8 NC_006146.1 + 170195 0.82 0.145092
Target:  5'- gGgCGGGGCCGggGCCu-GGCGGgGGCc -3'
miRNA:   3'- -CgGCCCUGGCuuUGGuuCCGUCgCCG- -5'
28841 5' -57.8 NC_006146.1 + 90241 0.72 0.549559
Target:  5'- aGCCGaGGGa-GAGGCCGAGGUAGaggaggaGGCa -3'
miRNA:   3'- -CGGC-CCUggCUUUGGUUCCGUCg------CCG- -5'
28841 5' -57.8 NC_006146.1 + 51587 0.72 0.530193
Target:  5'- gGCCgaagggGGGACUGAGGCCGguugcgucGGGaCAGcCGGCu -3'
miRNA:   3'- -CGG------CCCUGGCUUUGGU--------UCC-GUC-GCCG- -5'
28841 5' -57.8 NC_006146.1 + 57351 0.73 0.501633
Target:  5'- cCCGGGugUcggugaggGAGGCUgcGGCGGUGGCg -3'
miRNA:   3'- cGGCCCugG--------CUUUGGuuCCGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 45121 0.74 0.464654
Target:  5'- gGCCGGuGACCGccggGAGCCuuGGGCuuuGCGGg -3'
miRNA:   3'- -CGGCC-CUGGC----UUUGGu-UCCGu--CGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.