miRNA display CGI


Results 1 - 20 of 526 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28841 5' -57.8 NC_006146.1 + 126795 0.83 0.134558
Target:  5'- cGCCGGGcaGCCGggGCCugGAGGUuuccGCGGCg -3'
miRNA:   3'- -CGGCCC--UGGCuuUGG--UUCCGu---CGCCG- -5'
28841 5' -57.8 NC_006146.1 + 170689 0.76 0.325705
Target:  5'- cGCCccgGGGACCGucGCgGGGGCAcCGGCg -3'
miRNA:   3'- -CGG---CCCUGGCuuUGgUUCCGUcGCCG- -5'
28841 5' -57.8 NC_006146.1 + 57037 0.76 0.340351
Target:  5'- gGCCGGGG-CGAAgccGCCAGGGUugaGGCGGg -3'
miRNA:   3'- -CGGCCCUgGCUU---UGGUUCCG---UCGCCg -5'
28841 5' -57.8 NC_006146.1 + 156546 0.66 0.886373
Target:  5'- cCCGGGAcCCGAccccACCAgcaGGGCcGCaacGGCc -3'
miRNA:   3'- cGGCCCU-GGCUu---UGGU---UCCGuCG---CCG- -5'
28841 5' -57.8 NC_006146.1 + 170195 0.82 0.145092
Target:  5'- gGgCGGGGCCGggGCCu-GGCGGgGGCc -3'
miRNA:   3'- -CgGCCCUGGCuuUGGuuCCGUCgCCG- -5'
28841 5' -57.8 NC_006146.1 + 67051 0.82 0.145092
Target:  5'- gGCCGGGACgGAGACCAccucugccagacGGGCcgagaaggggucGGCGGCc -3'
miRNA:   3'- -CGGCCCUGgCUUUGGU------------UCCG------------UCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 117231 0.8 0.208262
Target:  5'- cCCGGGcuuccuggaaagcgGCCGggGCCAGGGgGGuCGGCa -3'
miRNA:   3'- cGGCCC--------------UGGCuuUGGUUCCgUC-GCCG- -5'
28841 5' -57.8 NC_006146.1 + 55043 0.8 0.214867
Target:  5'- gGUCGGGGCCGggGCCugccacAGGCGGCcGUa -3'
miRNA:   3'- -CGGCCCUGGCuuUGGu-----UCCGUCGcCG- -5'
28841 5' -57.8 NC_006146.1 + 44313 0.78 0.253575
Target:  5'- aGUgGGGGCUGggGCCGuGGCAGCcgggGGCu -3'
miRNA:   3'- -CGgCCCUGGCuuUGGUuCCGUCG----CCG- -5'
28841 5' -57.8 NC_006146.1 + 4663 0.76 0.325705
Target:  5'- cGCCGuccuGGGCCGGguGGgCGAGGCGGgGGCa -3'
miRNA:   3'- -CGGC----CCUGGCU--UUgGUUCCGUCgCCG- -5'
28841 5' -57.8 NC_006146.1 + 113723 0.78 0.271846
Target:  5'- aGCCGGGACggUGAAGUCGuggaAGGUAGCGGCc -3'
miRNA:   3'- -CGGCCCUG--GCUUUGGU----UCCGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 45047 0.79 0.247712
Target:  5'- gGCCGGGGCCGGcuCCcuAGG-GGCGGCu -3'
miRNA:   3'- -CGGCCCUGGCUuuGGu-UCCgUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 167400 0.82 0.145092
Target:  5'- gGgCGGGGCCGggGCCu-GGCGGgGGCc -3'
miRNA:   3'- -CgGCCCUGGCuuUGGuuCCGUCgCCG- -5'
28841 5' -57.8 NC_006146.1 + 44211 0.78 0.278167
Target:  5'- aGCCGGGGgCGGugccuugguGACCGucuccucuggccGGGCGGCGGUg -3'
miRNA:   3'- -CGGCCCUgGCU---------UUGGU------------UCCGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 168332 0.82 0.145092
Target:  5'- gGgCGGGGCCGggGCCu-GGCGGgGGCc -3'
miRNA:   3'- -CgGCCCUGGCuuUGGuuCCGUCgCCG- -5'
28841 5' -57.8 NC_006146.1 + 127073 0.8 0.214867
Target:  5'- gGCgCGGGaaGCCGAAaggGCCAGGGCggAGCGGUg -3'
miRNA:   3'- -CG-GCCC--UGGCUU---UGGUUCCG--UCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 56131 0.77 0.310836
Target:  5'- gGCCGcGGGCCccGAGACCGAGaGCAccuccccGCGGCc -3'
miRNA:   3'- -CGGC-CCUGG--CUUUGGUUC-CGU-------CGCCG- -5'
28841 5' -57.8 NC_006146.1 + 34075 0.76 0.332969
Target:  5'- gGCaCGGGGCCGggGgucCCGggGGGCAGCcGCg -3'
miRNA:   3'- -CG-GCCCUGGCuuU---GGU--UCCGUCGcCG- -5'
28841 5' -57.8 NC_006146.1 + 169264 0.82 0.145092
Target:  5'- gGgCGGGGCCGggGCCu-GGCGGgGGCc -3'
miRNA:   3'- -CgGCCCUGGCuuUGGuuCCGUCgCCG- -5'
28841 5' -57.8 NC_006146.1 + 156912 0.81 0.176945
Target:  5'- aGCCcGG-CCGAGGCCuGGGUGGCGGCg -3'
miRNA:   3'- -CGGcCCuGGCUUUGGuUCCGUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.