miRNA display CGI


Results 1 - 20 of 526 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28841 5' -57.8 NC_006146.1 + 156546 0.66 0.886373
Target:  5'- cCCGGGAcCCGAccccACCAgcaGGGCcGCaacGGCc -3'
miRNA:   3'- cGGCCCU-GGCUu---UGGU---UCCGuCG---CCG- -5'
28841 5' -57.8 NC_006146.1 + 29583 0.66 0.886373
Target:  5'- aGCUGGGACagGAccCCGGGGgcuCAGCcaGGCu -3'
miRNA:   3'- -CGGCCCUGg-CUuuGGUUCC---GUCG--CCG- -5'
28841 5' -57.8 NC_006146.1 + 156965 0.66 0.885702
Target:  5'- aGCCGGGGCCucggggagggagaGAGGagGGGGaGGCGGg -3'
miRNA:   3'- -CGGCCCUGG-------------CUUUggUUCCgUCGCCg -5'
28841 5' -57.8 NC_006146.1 + 153887 0.66 0.885702
Target:  5'- aGCCGGGGCCucggggagggagaGAGGagGGGGaGGCGGg -3'
miRNA:   3'- -CGGCCCUGG-------------CUUUggUUCCgUCGCCg -5'
28841 5' -57.8 NC_006146.1 + 150809 0.66 0.885702
Target:  5'- aGCCGGGGCCucggggagggagaGAGGagGGGGaGGCGGg -3'
miRNA:   3'- -CGGCCCUGG-------------CUUUggUUCCgUCGCCg -5'
28841 5' -57.8 NC_006146.1 + 147731 0.66 0.885702
Target:  5'- aGCCGGGGCCucggggagggagaGAGGagGGGGaGGCGGg -3'
miRNA:   3'- -CGGCCCUGG-------------CUUUggUUCCgUCGCCg -5'
28841 5' -57.8 NC_006146.1 + 144654 0.66 0.885702
Target:  5'- aGCCGGGGCCucggggagggagaGAGGagGGGGaGGCGGg -3'
miRNA:   3'- -CGGCCCUGG-------------CUUUggUUCCgUCGCCg -5'
28841 5' -57.8 NC_006146.1 + 141576 0.66 0.885702
Target:  5'- aGCCGGGGCCucggggagggagaGAGGagGGGGaGGCGGg -3'
miRNA:   3'- -CGGCCCUGG-------------CUUUggUUCCgUCGCCg -5'
28841 5' -57.8 NC_006146.1 + 84377 0.66 0.884353
Target:  5'- aGgCGuGGACCGGgcGGCCAucauggccuccgguAGGCAgGUGGUu -3'
miRNA:   3'- -CgGC-CCUGGCU--UUGGU--------------UCCGU-CGCCG- -5'
28841 5' -57.8 NC_006146.1 + 84937 0.66 0.886373
Target:  5'- gGuuGGGACgGAGgcGCCucgcuuGGgGGgGGCa -3'
miRNA:   3'- -CggCCCUGgCUU--UGGuu----CCgUCgCCG- -5'
28841 5' -57.8 NC_006146.1 + 108534 0.66 0.886373
Target:  5'- gGCCaGGGGCCu---CUccGGC-GCGGCg -3'
miRNA:   3'- -CGG-CCCUGGcuuuGGuuCCGuCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 113250 0.66 0.886373
Target:  5'- aCCGGGAgaCUGGAGCCucGGUaAGUgaaGGCa -3'
miRNA:   3'- cGGCCCU--GGCUUUGGuuCCG-UCG---CCG- -5'
28841 5' -57.8 NC_006146.1 + 17606 0.66 0.886373
Target:  5'- cCCGGGcCUGguGCCuGGaGCAGaaaaGGCa -3'
miRNA:   3'- cGGCCCuGGCuuUGGuUC-CGUCg---CCG- -5'
28841 5' -57.8 NC_006146.1 + 61572 0.66 0.886373
Target:  5'- cCCGaGGGCCacgcugagGAAgaGCCGGcuGCAGCGGCc -3'
miRNA:   3'- cGGC-CCUGG--------CUU--UGGUUc-CGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 155867 0.66 0.886373
Target:  5'- gGCCcgagaccugGGGGCCcGGGCCuggAAGGUccGGUGGCu -3'
miRNA:   3'- -CGG---------CCCUGGcUUUGG---UUCCG--UCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 152789 0.66 0.886373
Target:  5'- gGCCcgagaccugGGGGCCcGGGCCuggAAGGUccGGUGGCu -3'
miRNA:   3'- -CGG---------CCCUGGcUUUGG---UUCCG--UCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 149711 0.66 0.886373
Target:  5'- gGCCcgagaccugGGGGCCcGGGCCuggAAGGUccGGUGGCu -3'
miRNA:   3'- -CGG---------CCCUGGcUUUGG---UUCCG--UCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 146634 0.66 0.886373
Target:  5'- gGCCcgagaccugGGGGCCcGGGCCuggAAGGUccGGUGGCu -3'
miRNA:   3'- -CGG---------CCCUGGcUUUGG---UUCCG--UCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 143556 0.66 0.886373
Target:  5'- gGCCcgagaccugGGGGCCcGGGCCuggAAGGUccGGUGGCu -3'
miRNA:   3'- -CGG---------CCCUGGcUUUGG---UUCCG--UCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 115722 0.66 0.886373
Target:  5'- cGCCGcGGCCGcAGCCuGGGaC-GCGGUc -3'
miRNA:   3'- -CGGCcCUGGCuUUGGuUCC-GuCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.