miRNA display CGI


Results 1 - 20 of 526 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28841 5' -57.8 NC_006146.1 + 505 0.67 0.818032
Target:  5'- aCCGGGGCCGcuguacuacAGGCCAuuuacaguaAGuaGCAGCGuGCu -3'
miRNA:   3'- cGGCCCUGGC---------UUUGGU---------UC--CGUCGC-CG- -5'
28841 5' -57.8 NC_006146.1 + 576 0.66 0.872551
Target:  5'- cCCaGGAgaGggGCCGGGGgC-GCGGCc -3'
miRNA:   3'- cGGcCCUggCuuUGGUUCC-GuCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 1507 0.66 0.872551
Target:  5'- cCCaGGAgaGggGCCGGGGgC-GCGGCc -3'
miRNA:   3'- cGGcCCUggCuuUGGUUCC-GuCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 2439 0.66 0.872551
Target:  5'- cCCaGGAgaGggGCCGGGGgC-GCGGCc -3'
miRNA:   3'- cGGcCCUggCuuUGGUUCC-GuCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 2803 0.75 0.403589
Target:  5'- cGCCaGcaGGCCuuccAGACCAAGGCGGUGGCg -3'
miRNA:   3'- -CGGcC--CUGGc---UUUGGUUCCGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 3361 0.67 0.826357
Target:  5'- aGCgGGGGgaGaAAAUCAAcGGCcGCGGCg -3'
miRNA:   3'- -CGgCCCUggC-UUUGGUU-CCGuCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 3371 0.66 0.872551
Target:  5'- cCCaGGAgaGggGCCGGGGgC-GCGGCc -3'
miRNA:   3'- cGGcCCUggCuuUGGUUCC-GuCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 4663 0.76 0.325705
Target:  5'- cGCCGuccuGGGCCGGguGGgCGAGGCGGgGGCa -3'
miRNA:   3'- -CGGC----CCUGGCU--UUgGUUCCGUCgCCG- -5'
28841 5' -57.8 NC_006146.1 + 4951 0.71 0.618716
Target:  5'- uGCCccgGGGACCaGggGCCAcgAGaGCcuccuGGCGGCc -3'
miRNA:   3'- -CGG---CCCUGG-CuuUGGU--UC-CG-----UCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 5065 0.66 0.879567
Target:  5'- -gCGGGGCUG--GCCGuuggAGGCGuccacGCGGCc -3'
miRNA:   3'- cgGCCCUGGCuuUGGU----UCCGU-----CGCCG- -5'
28841 5' -57.8 NC_006146.1 + 6497 0.68 0.764984
Target:  5'- aCCGGGugguccuuggauGCUccuGACCcuuGGCGGCGGCg -3'
miRNA:   3'- cGGCCC------------UGGcu-UUGGuu-CCGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 8111 0.75 0.379017
Target:  5'- aCUGGGgugguaugACUGAGGCCGcuAGGUGGCGGCa -3'
miRNA:   3'- cGGCCC--------UGGCUUUGGU--UCCGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 10731 0.7 0.678432
Target:  5'- uCUGGGcaGCCaGAgccAGCCGGGGCcauGCGGCu -3'
miRNA:   3'- cGGCCC--UGG-CU---UUGGUUCCGu--CGCCG- -5'
28841 5' -57.8 NC_006146.1 + 11421 0.74 0.428278
Target:  5'- aGCCugcaGGACCaGGccaagguGGCCAAGGUGGCGGCc -3'
miRNA:   3'- -CGGc---CCUGG-CU-------UUGGUUCCGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 11628 0.66 0.865331
Target:  5'- uGCgaGGGccCCGAGGCCcgcGUGGCGGCg -3'
miRNA:   3'- -CGg-CCCu-GGCUUUGGuucCGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 12016 0.72 0.539846
Target:  5'- uCCGGuGcCCGAGACCGGcagcuacguggcGGguGCGGCc -3'
miRNA:   3'- cGGCC-CuGGCUUUGGUU------------CCguCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 12378 0.67 0.82964
Target:  5'- cCCGGGACUuuaucaagauguucaGGGACguGGacGCGGCGGUg -3'
miRNA:   3'- cGGCCCUGG---------------CUUUGguUC--CGUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 12835 0.69 0.717623
Target:  5'- uCCGGcGGCCGGAcCCGAGGaGGCgccuggGGCg -3'
miRNA:   3'- cGGCC-CUGGCUUuGGUUCCgUCG------CCG- -5'
28841 5' -57.8 NC_006146.1 + 13113 0.7 0.688305
Target:  5'- gGCgGGGuCCGGccucucCUggGGCAGCaGGCu -3'
miRNA:   3'- -CGgCCCuGGCUuu----GGuuCCGUCG-CCG- -5'
28841 5' -57.8 NC_006146.1 + 13172 0.72 0.539846
Target:  5'- uGCCGGGcaaccuggugACCuacGCCAA-GCAGCGGCu -3'
miRNA:   3'- -CGGCCC----------UGGcuuUGGUUcCGUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.