miRNA display CGI


Results 1 - 20 of 526 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28841 5' -57.8 NC_006146.1 + 170689 0.76 0.325705
Target:  5'- cGCCccgGGGACCGucGCgGGGGCAcCGGCg -3'
miRNA:   3'- -CGG---CCCUGGCuuUGgUUCCGUcGCCG- -5'
28841 5' -57.8 NC_006146.1 + 170580 0.66 0.872551
Target:  5'- gGCCGGGAgaaUGAcAGCUggGcGUGGCGaGCg -3'
miRNA:   3'- -CGGCCCUg--GCU-UUGGuuC-CGUCGC-CG- -5'
28841 5' -57.8 NC_006146.1 + 170518 0.7 0.668524
Target:  5'- cGCgCGGcGGgCGggGCCugagGGGGC-GCGGCg -3'
miRNA:   3'- -CG-GCC-CUgGCuuUGG----UUCCGuCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 170451 0.69 0.745372
Target:  5'- uGCCGGGGgacCCGGgggcgugucccgcGACCcgaGGGGCgAGCGGg -3'
miRNA:   3'- -CGGCCCU---GGCU-------------UUGG---UUCCG-UCGCCg -5'
28841 5' -57.8 NC_006146.1 + 170391 0.68 0.773242
Target:  5'- gGCCGGG-CCuccccugGggGCCucGGgGGCGGa -3'
miRNA:   3'- -CGGCCCuGG-------CuuUGGuuCCgUCGCCg -5'
28841 5' -57.8 NC_006146.1 + 170222 0.66 0.879567
Target:  5'- aGCgCGGGGucCCGggGCgGGGGgucgGGCGGg -3'
miRNA:   3'- -CG-GCCCU--GGCuuUGgUUCCg---UCGCCg -5'
28841 5' -57.8 NC_006146.1 + 170195 0.82 0.145092
Target:  5'- gGgCGGGGCCGggGCCu-GGCGGgGGCc -3'
miRNA:   3'- -CgGCCCUGGCuuUGGuuCCGUCgCCG- -5'
28841 5' -57.8 NC_006146.1 + 170089 0.71 0.617719
Target:  5'- gGCCggcgggaGGGGCCGgcGCCGcagGGGgGGcCGGCg -3'
miRNA:   3'- -CGG-------CCCUGGCuuUGGU---UCCgUC-GCCG- -5'
28841 5' -57.8 NC_006146.1 + 169982 0.71 0.628688
Target:  5'- gGCCGGcGcgcgcCCGggGuCCcGGGgGGCGGCg -3'
miRNA:   3'- -CGGCC-Cu----GGCuuU-GGuUCCgUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 169759 0.69 0.707909
Target:  5'- gGCCcgGGGACCcucGCgGGGGCAcCGGCg -3'
miRNA:   3'- -CGG--CCCUGGcuuUGgUUCCGUcGCCG- -5'
28841 5' -57.8 NC_006146.1 + 169574 0.7 0.652615
Target:  5'- cCCGGGGcCCGAGcgcgcgucgggugggGCCugagGGGGC-GCGGCg -3'
miRNA:   3'- cGGCCCU-GGCUU---------------UGG----UUCCGuCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 169520 0.69 0.745372
Target:  5'- uGCCGGGGgacCCGGgggcgugucccgcGACCcgaGGGGCgAGCGGg -3'
miRNA:   3'- -CGGCCCU---GGCU-------------UUGG---UUCCG-UCGCCg -5'
28841 5' -57.8 NC_006146.1 + 169460 0.68 0.773242
Target:  5'- gGCCGGG-CCuccccugGggGCCucGGgGGCGGa -3'
miRNA:   3'- -CGGCCCuGG-------CuuUGGuuCCgUCGCCg -5'
28841 5' -57.8 NC_006146.1 + 169291 0.66 0.879567
Target:  5'- aGCgCGGGGucCCGggGCgGGGGgucgGGCGGg -3'
miRNA:   3'- -CG-GCCCU--GGCuuUGgUUCCg---UCGCCg -5'
28841 5' -57.8 NC_006146.1 + 169264 0.82 0.145092
Target:  5'- gGgCGGGGCCGggGCCu-GGCGGgGGCc -3'
miRNA:   3'- -CgGCCCUGGCuuUGGuuCCGUCgCCG- -5'
28841 5' -57.8 NC_006146.1 + 169157 0.69 0.745372
Target:  5'- gGCCggcgggaGGGGCCGgcGCCugcaGGGGgGGcCGGCg -3'
miRNA:   3'- -CGG-------CCCUGGCuuUGG----UUCCgUC-GCCG- -5'
28841 5' -57.8 NC_006146.1 + 169050 0.71 0.628688
Target:  5'- gGCCGGcGcgcgcCCGggGuCCcGGGgGGCGGCg -3'
miRNA:   3'- -CGGCC-Cu----GGCuuU-GGuUCCgUCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 168827 0.69 0.707909
Target:  5'- gGCCcgGGGACCcucGCgGGGGCAcCGGCg -3'
miRNA:   3'- -CGG--CCCUGGcuuUGgUUCCGUcGCCG- -5'
28841 5' -57.8 NC_006146.1 + 168642 0.73 0.505403
Target:  5'- cCCGGGGCCcgagcgcgcgucgguGggGCCugagGGGGC-GCGGCg -3'
miRNA:   3'- cGGCCCUGG---------------CuuUGG----UUCCGuCGCCG- -5'
28841 5' -57.8 NC_006146.1 + 168588 0.69 0.745372
Target:  5'- uGCCGGGGgacCCGGgggcgugucccgcGACCcgaGGGGCgAGCGGg -3'
miRNA:   3'- -CGGCCCU---GGCU-------------UUGG---UUCCG-UCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.