miRNA display CGI


Results 41 - 60 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28844 3' -54.3 NC_006146.1 + 168343 0.67 0.956019
Target:  5'- gGGCCugGCgGGGGccaGCGCGgggUCCCgGGGCGg -3'
miRNA:   3'- -CCGG--UGgUUCU---UGCGC---AGGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 170206 0.67 0.956019
Target:  5'- gGGCCugGCgGGGGccaGCGCGgggUCCCgGGGCGg -3'
miRNA:   3'- -CCGG--UGgUUCU---UGCGC---AGGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 169275 0.67 0.956019
Target:  5'- gGGCCugGCgGGGGccaGCGCGgggUCCCgGGGCGg -3'
miRNA:   3'- -CCGG--UGgUUCU---UGCGC---AGGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 167411 0.67 0.956019
Target:  5'- gGGCCugGCgGGGGccaGCGCGgggUCCCgGGGCGg -3'
miRNA:   3'- -CCGG--UGgUUCU---UGCGC---AGGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 131087 0.67 0.956019
Target:  5'- aGGCCGCCGGGccgucAACGgccgcCGUCCCaGAAg- -3'
miRNA:   3'- -CCGGUGGUUC-----UUGC-----GCAGGGaCUUgc -5'
28844 3' -54.3 NC_006146.1 + 25178 0.67 0.955638
Target:  5'- cGGCCAgagcgacaUCAAGcuGACGCGcuccugcUCCCaGAGCGg -3'
miRNA:   3'- -CCGGU--------GGUUC--UUGCGC-------AGGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 114117 0.67 0.954868
Target:  5'- cGGCCGCCGcgcucaccgaGGAggccuGCGCGUgcuccgcgaucaggCCCcGGACGu -3'
miRNA:   3'- -CCGGUGGU----------UCU-----UGCGCA--------------GGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 146358 0.67 0.954868
Target:  5'- uGGCCgGCCAgaAGAGCGCGaaaccgagccugacUCCC-GGGCc -3'
miRNA:   3'- -CCGG-UGGU--UCUUGCGC--------------AGGGaCUUGc -5'
28844 3' -54.3 NC_006146.1 + 139999 0.67 0.952105
Target:  5'- gGGCCACCAAG--UGgGUUCCUaucGCGg -3'
miRNA:   3'- -CCGGUGGUUCuuGCgCAGGGAcu-UGC- -5'
28844 3' -54.3 NC_006146.1 + 54065 0.67 0.952105
Target:  5'- gGGcCCACCuGGccgcCGCGUCCCggcacacguccUGGACGc -3'
miRNA:   3'- -CC-GGUGGuUCuu--GCGCAGGG-----------ACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 71156 0.67 0.952105
Target:  5'- uGGCCucuuCCGAuGGGucCGCGUCCUcgGAGCa -3'
miRNA:   3'- -CCGGu---GGUU-CUU--GCGCAGGGa-CUUGc -5'
28844 3' -54.3 NC_006146.1 + 130320 0.67 0.951701
Target:  5'- cGGCCGCCcAGGGCcaggaccucaucaGCGUCCCcc-GCa -3'
miRNA:   3'- -CCGGUGGuUCUUG-------------CGCAGGGacuUGc -5'
28844 3' -54.3 NC_006146.1 + 115493 0.67 0.947963
Target:  5'- uGCCAgCCAGGuACGUccugggGUCCCgGAGCa -3'
miRNA:   3'- cCGGU-GGUUCuUGCG------CAGGGaCUUGc -5'
28844 3' -54.3 NC_006146.1 + 47831 0.67 0.947963
Target:  5'- gGGCUGCC-AGAGCGCGgCUCUcgaGGACc -3'
miRNA:   3'- -CCGGUGGuUCUUGCGCaGGGA---CUUGc -5'
28844 3' -54.3 NC_006146.1 + 130832 0.67 0.947963
Target:  5'- aGGCCcuccGCCGGGAGaCGCuGUCCUacGGACa -3'
miRNA:   3'- -CCGG----UGGUUCUU-GCG-CAGGGa-CUUGc -5'
28844 3' -54.3 NC_006146.1 + 102807 0.67 0.947963
Target:  5'- uGGCCGCCcaccuGGAucGCGCGggggCUCUGcGCu -3'
miRNA:   3'- -CCGGUGGu----UCU--UGCGCa---GGGACuUGc -5'
28844 3' -54.3 NC_006146.1 + 43680 0.67 0.943591
Target:  5'- gGGUCACgAagcgagucAGGACGCGgcgagCCUGGGCGa -3'
miRNA:   3'- -CCGGUGgU--------UCUUGCGCag---GGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 54212 0.67 0.943591
Target:  5'- uGGCCACagcccaguuuauUGAGAACGUGggaaaUCUGGACGa -3'
miRNA:   3'- -CCGGUG------------GUUCUUGCGCag---GGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 127436 0.67 0.940856
Target:  5'- cGGCCGCCGAGGaggcugccgcuccagAUGUGgcggCCCgcaggcuacugaUGGACGa -3'
miRNA:   3'- -CCGGUGGUUCU---------------UGCGCa---GGG------------ACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 112707 0.67 0.938986
Target:  5'- uGGCC-CgCAGcAGgGCGUCCCUGAGg- -3'
miRNA:   3'- -CCGGuG-GUUcUUgCGCAGGGACUUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.