Results 21 - 40 of 167 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28844 | 3' | -54.3 | NC_006146.1 | + | 126801 | 0.66 | 0.96644 |
Target: 5'- cGG-CGCCGAGcGCGCGgCCCgaggugGAACc -3' miRNA: 3'- -CCgGUGGUUCuUGCGCaGGGa-----CUUGc -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 126010 | 0.66 | 0.96644 |
Target: 5'- cGGCCGCuCAAGGuaccauCGCGagCCCagGGGCu -3' miRNA: 3'- -CCGGUG-GUUCUu-----GCGCa-GGGa-CUUGc -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 15988 | 0.66 | 0.96644 |
Target: 5'- cGCCugCGAagggcGGACGCGgucagCCC-GGGCGa -3' miRNA: 3'- cCGGugGUU-----CUUGCGCa----GGGaCUUGC- -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 147823 | 0.66 | 0.96644 |
Target: 5'- gGGCCGCCGGGGucccuccgGC-CGg-CCUGAugGa -3' miRNA: 3'- -CCGGUGGUUCU--------UGcGCagGGACUugC- -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 14134 | 0.66 | 0.96644 |
Target: 5'- cGGCCuacaGCCAGGuguACGCGcuggCCguggagCUGAGCGu -3' miRNA: 3'- -CCGG----UGGUUCu--UGCGCa---GG------GACUUGC- -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 150901 | 0.66 | 0.96644 |
Target: 5'- gGGCCGCCGGGGucccuccgGC-CGg-CCUGAugGa -3' miRNA: 3'- -CCGGUGGUUCU--------UGcGCagGGACUugC- -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 153979 | 0.66 | 0.96644 |
Target: 5'- gGGCCGCCGGGGucccuccgGC-CGg-CCUGAugGa -3' miRNA: 3'- -CCGGUGGUUCU--------UGcGCagGGACUugC- -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 157057 | 0.66 | 0.96644 |
Target: 5'- gGGCCGCCGGGGucccuccgGC-CGg-CCUGAugGa -3' miRNA: 3'- -CCGGUGGUUCU--------UGcGCagGGACUugC- -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 12082 | 0.66 | 0.963182 |
Target: 5'- gGGCCggGCCccGGcCGUGUgCCUGAACa -3' miRNA: 3'- -CCGG--UGGuuCUuGCGCAgGGACUUGc -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 10581 | 0.66 | 0.963182 |
Target: 5'- uGGCCAgCcuGAGCGUcUUCCUGAAa- -3' miRNA: 3'- -CCGGUgGuuCUUGCGcAGGGACUUgc -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 146496 | 0.66 | 0.963182 |
Target: 5'- cGGCCuCCuGGAACGUaaaCCCggaGAGCGa -3' miRNA: 3'- -CCGGuGGuUCUUGCGca-GGGa--CUUGC- -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 111633 | 0.66 | 0.95971 |
Target: 5'- aGGuCCGCgAAG-ACGuCGgccaggCCCUGAACa -3' miRNA: 3'- -CC-GGUGgUUCuUGC-GCa-----GGGACUUGc -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 40213 | 0.66 | 0.95971 |
Target: 5'- -uCCGCCcAGAucuCGCGcCCCUGAuuGCa -3' miRNA: 3'- ccGGUGGuUCUu--GCGCaGGGACU--UGc -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 150060 | 0.66 | 0.95971 |
Target: 5'- aGGUgGCCuGGcAACGCGaacccCCCUGGGCc -3' miRNA: 3'- -CCGgUGGuUC-UUGCGCa----GGGACUUGc -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 143904 | 0.66 | 0.95971 |
Target: 5'- aGGUgGCCuGGcAACGCGaacccCCCUGGGCc -3' miRNA: 3'- -CCGgUGGuUC-UUGCGCa----GGGACUUGc -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 146982 | 0.66 | 0.95971 |
Target: 5'- aGGUgGCCuGGcAACGCGaacccCCCUGGGCc -3' miRNA: 3'- -CCGgUGGuUC-UUGCGCa----GGGACUUGc -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 153138 | 0.66 | 0.95971 |
Target: 5'- aGGUgGCCuGGcAACGCGaacccCCCUGGGCc -3' miRNA: 3'- -CCGgUGGuUC-UUGCGCa----GGGACUUGc -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 156216 | 0.66 | 0.95971 |
Target: 5'- aGGUgGCCuGGcAACGCGaacccCCCUGGGCc -3' miRNA: 3'- -CCGgUGGuUC-UUGCGCa----GGGACUUGc -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 82062 | 0.66 | 0.958626 |
Target: 5'- uGGCCACCAAGGGCcuGCuucaggugcugggaGUCuCCUGuuACa -3' miRNA: 3'- -CCGGUGGUUCUUG--CG--------------CAG-GGACu-UGc -5' |
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28844 | 3' | -54.3 | NC_006146.1 | + | 47120 | 0.67 | 0.957522 |
Target: 5'- aGGCCaggaagcucugcuugGCCGAGGcguaGCGCacgagccuGUCCCUGAGg- -3' miRNA: 3'- -CCGG---------------UGGUUCU----UGCG--------CAGGGACUUgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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